[BEDTools] Update to upstream 2.19.0 release, hosted on Github

[verdurin]

commit 79e870831a29f16b60259d039550d531775a8e56
Author: Adam Huffman <verdurin at fedoraproject.org>
Date:   Sun Mar 2 23:42:48 2014 +0000

    Update to upstream 2.19.0 release, hosted on Github

 .gitignore    |    1 +
 BEDTools.spec |   18 +++++++++++-------
 sources       |    3 +--
 3 files changed, 13 insertions(+), 9 deletions(-)
---
diff --git a/.gitignore b/.gitignore
index 96e31be..fd5a56b 100644
--- a/.gitignore
+++ b/.gitignore
@@ -8,3 +8,4 @@
 /BEDTools.v2.13.4.tar.gz
 /BEDTools.v2.15.0.tar.gz
 /BEDTools.v2.17.0.tar.gz
+/bedtools-2.19.0.tar.gz
diff --git a/BEDTools.spec b/BEDTools.spec
index 6441b87..3a20122 100644
--- a/BEDTools.spec
+++ b/BEDTools.spec
@@ -1,17 +1,13 @@
 Name:		BEDTools
-Version:	2.17.0
+Version:	2.19.0
 Release:	1%{?dist}
 Summary:	A flexible suite of utilities for comparing genomic features
 
 Group:		Applications/Engineering
 License:	GPLv2+
-URL:		http://code.google.com/p/bedtools/
+URL:		https://github.com/arq5x/bedtools
 
-# Download is listed in an RPM-unfriendly way on the Google Code site
-# The file can be obtained at
-# http://bedtools.googlecode.com/files/BEDTools.v2.13.4.tar.gz
-
-Source0:	http://bedtools.googlecode.com/files/%{name}.v%{version}.tar.gz
+Source0:	https://github.com/arq5x/bedtools2/releases/download/v%{version}/bedtools-%{version}.tar.gz
 Source1:	http://bedtools.googlecode.com/files/%{name}-User-Manual.v4.pdf
 BuildRoot:	%{_tmppath}/%{name}-%{version}-%{release}-root-%(%{__id_u} -n)
 
@@ -94,6 +90,7 @@ rm -rf %{buildroot}
 %{_bindir}/getOverlap
 %{_bindir}/groupBy
 %{_bindir}/intersectBed
+%{_bindir}/jaccard
 %{_bindir}/linksBed
 %{_bindir}/mapBed
 %{_bindir}/maskFastaFromBed
@@ -104,6 +101,8 @@ rm -rf %{buildroot}
 %{_bindir}/pairToBed
 %{_bindir}/pairToPair
 %{_bindir}/randomBed
+%{_bindir}/reldist
+%{_bindir}/sample
 %{_bindir}/shuffleBed
 %{_bindir}/slopBed
 %{_bindir}/sortBed
@@ -121,6 +120,11 @@ rm -rf %{buildroot}
 %doc %{name}-User-Manual.v4.pdf
 
 %changelog
+* Sun Mar 02 2014 Adam Huffman <bloch at verdurin.com> - 2.19.0-1
+- Update to upstream 2.19.0 release
+- Upstream now hosted at Github, not Google Code
+- Add three new tools
+
 * Tue Aug 06 2013 Adam Huffman <bloch at verdurin.com> - 2.17.0-1
 - Update to upstream 2.17.0 release
 - Fix changed tarball directory name
diff --git a/sources b/sources
index da50ba0..21da6c4 100644
--- a/sources
+++ b/sources
@@ -1,2 +1 @@
-e7209a6f88f8df844474369bd40db8be  BEDTools.v2.17.0.tar.gz
-597fb82c8790fa47c18cd6bf8df25ac2  BEDTools-User-Manual.v4.pdf
+86b655103ad40c28d246eed9a1f15175  bedtools-2.19.0.tar.gz