[R-Biostrings] 2.32.0

[Tom Callaway]

commit 68080cb0290686c2825a2b9c2ef81a57d0d00447
Author: Tom Callaway <spot at fedoraproject.org>
Date:   Mon Jun 9 12:44:57 2014 -0400

    2.32.0

 .gitignore                     |    1 +
 R-Biostrings-no-zlibbioc.patch |   23 +++++++++++++++++++++++
 R-Biostrings.spec              |   15 ++++++++++-----
 sources                        |    2 +-
 4 files changed, 35 insertions(+), 6 deletions(-)
---
diff --git a/.gitignore b/.gitignore
index 7ce1ff6..f4d7fa6 100644
--- a/.gitignore
+++ b/.gitignore
@@ -9,3 +9,4 @@ Biostrings_2.16.6.tar.gz
 /Biostrings_2.26.3.tar.gz
 /Biostrings_2.28.0.tar.gz
 /Biostrings_2.30.1.tar.gz
+/Biostrings_2.32.0.tar.gz
diff --git a/R-Biostrings-no-zlibbioc.patch b/R-Biostrings-no-zlibbioc.patch
new file mode 100644
index 0000000..12d6643
--- /dev/null
+++ b/R-Biostrings-no-zlibbioc.patch
@@ -0,0 +1,23 @@
+diff -up Biostrings/Biostrings/DESCRIPTION.no-zlibbioc Biostrings/Biostrings/DESCRIPTION
+--- Biostrings/Biostrings/DESCRIPTION.no-zlibbioc	2014-06-09 12:42:56.289757070 -0400
++++ Biostrings/Biostrings/DESCRIPTION	2014-06-09 12:43:04.439700588 -0400
+@@ -12,7 +12,7 @@ biocViews: SequenceMatching, Genetics, S
+ Depends: R (>= 2.8.0), methods, BiocGenerics (>= 0.5.4), IRanges (>=
+         1.21.35), XVector (>= 0.3.6)
+ Imports: graphics, methods, stats, utils, BiocGenerics, IRanges,
+-        XVector, zlibbioc
++        XVector
+ LinkingTo: IRanges, XVector
+ Enhances: Rmpi
+ Suggests: BSgenome (>= 1.13.14), BSgenome.Celegans.UCSC.ce2 (>=
+diff -up Biostrings/Biostrings/NAMESPACE.no-zlibbioc Biostrings/Biostrings/NAMESPACE
+--- Biostrings/Biostrings/NAMESPACE.no-zlibbioc	2014-06-09 12:42:46.793822870 -0400
++++ Biostrings/Biostrings/NAMESPACE	2014-06-09 12:42:50.426797716 -0400
+@@ -19,7 +19,6 @@ importFrom(utils,
+ import(BiocGenerics)
+ import(IRanges)
+ import(XVector)
+-import(zlibbioc)
+ 
+ 
+ ### ==========================================================================
diff --git a/R-Biostrings.spec b/R-Biostrings.spec
index e318c1d..3505a34 100644
--- a/R-Biostrings.spec
+++ b/R-Biostrings.spec
@@ -1,22 +1,23 @@
 %global packname  Biostrings
 %global Rvers     3.0.0
-%global IRange    1.19.34
+%global IRange    1.21.35
 
 Name:             R-%{packname}
-Version:          2.30.1
-Release:          2%{dist}
+Version:          2.32.0
+Release:          1%{dist}
 Summary:          String objects representing biological sequences
 
 Group:            Applications/Engineering 
 License:          Artistic 2.0 
 URL:              http://bioconductor.org/packages/release/bioc/html/Biostrings.html
 Source0:          http://bioconductor.org/packages/release/bioc/src/contrib/%{packname}_%{version}.tar.gz
+Patch0:           R-Biostrings-no-zlibbioc.patch
 BuildRoot:        %{_tmppath}/%{name}-%{version}-%{release}-root-%(%{__id_u} -n)
 
 Requires:         R-core >= %{Rvers} R-methods R-utils R-IRanges >= %{IRange} R-Biobase 
-Requires:         R-XVector >= 0.1.3, R-BiocGenerics >= 0.5.4
+Requires:         R-XVector >= 0.3.6, R-BiocGenerics >= 0.5.4
 BuildRequires:    R-devel >= %{Rvers} tex(latex) R-methods R-utils R-IRanges-devel >= %{IRange} R-Biobase
-BuildRequires:    R-XVector-devel >= 0.1.3, R-BiocGenerics >= 0.5.4
+BuildRequires:    R-XVector-devel >= 0.3.6, R-BiocGenerics >= 0.5.4
 
 %description
 Memory efficient string containers, string matching algorithms, and other 
@@ -35,6 +36,7 @@ developing applications that use %{name}.
 
 %prep
 %setup -q -c -n %{packname}
+%patch0 -p1 -b .no-zlibbioc
 
 %build
 
@@ -82,6 +84,9 @@ rm -rf %{buildroot}
 %{_libdir}/R/library/%{packname}/include
 
 %changelog
+* Mon Jun  9 2014 Tom Callaway <spot at fedoraproject.org> - 2.32.0-1
+- update to 2.32.0
+
 * Fri Jun 06 2014 Fedora Release Engineering <rel-eng at lists.fedoraproject.org> - 2.30.1-2
 - Rebuilt for https://fedoraproject.org/wiki/Fedora_21_Mass_Rebuild
 
diff --git a/sources b/sources
index 6a98444..0e3436a 100644
--- a/sources
+++ b/sources
@@ -1 +1 @@
-acf4d4047855f20096e751cf5fadbf5e  Biostrings_2.30.1.tar.gz
+3de2d1d1230bc633edb331e33f887db6  Biostrings_2.32.0.tar.gz