[R-GenomeInfoDb] initial commit

[Tom Callaway]

commit b6fd925cf230da434eb13a83eda77fe6812b83e5
Author: Tom Callaway <spot at fedoraproject.org>
Date:   Wed Jun 11 15:45:22 2014 -0400

    initial commit

 .gitignore          |    1 +
 R-GenomeInfoDb.spec |   58 +++++++++++++++++++++++++++++++++++++++++++++++++++
 sources             |    1 +
 3 files changed, 60 insertions(+), 0 deletions(-)
---
diff --git a/.gitignore b/.gitignore
index e69de29..f68418f 100644
--- a/.gitignore
+++ b/.gitignore
@@ -0,0 +1 @@
+/GenomeInfoDb_1.0.2.tar.gz
diff --git a/R-GenomeInfoDb.spec b/R-GenomeInfoDb.spec
new file mode 100644
index 0000000..57fde16
--- /dev/null
+++ b/R-GenomeInfoDb.spec
@@ -0,0 +1,58 @@
+%global packname  GenomeInfoDb
+
+Name:             R-%{packname}
+Version:          1.0.2
+Release:          1%{?dist}
+Summary:          Utilities for manipulating chromosome and other 'seqname' identifiers
+Group:            Applications/Productivity
+License:          Artistic 2.0
+URL:              http://www.bioconductor.org/packages/release/bioc/html/GenomeInfoDb.html
+Source0:          http://www.bioconductor.org/packages/release/bioc/src/contrib/%{packname}_%{version}.tar.gz
+Requires:         R-core >= 3.1.0, tex(latex)
+BuildRequires:    R-devel >= 3.1.0
+BuildArch:        noarch
+
+%description
+The Seqnames package contains data and functions that define and allow 
+translation between different chromosome sequence naming conventions (e.g., 
+"chr1" versus "1"), including a function that attempts to place sequence 
+names in their natural, rather than lexicographic, order.
+
+%prep
+%setup -c -q -n %{packname}
+
+sed -i 's/\r//' GenomeInfoDb/NEWS
+
+%build
+
+%install
+mkdir -p %{buildroot}%{_datadir}/R/library
+%{_bindir}/R CMD INSTALL %{packname} -l %{buildroot}%{_datadir}/R/library 
+# Clean up in advance of check
+test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so)
+rm -rf $RPM_BUILD_ROOT%{_datadir}/R/library/R.css
+
+sed -i 's/\r//' %{buildroot}%{_datadir}/R/library/%{packname}/doc/Accept-organism-for-GenomeInfoDb.Rnw
+sed -i 's/\r//' %{buildroot}%{_datadir}/R/library/%{packname}/doc/GenomeInfoDb.Rnw
+
+%check
+# All sorts of missing Suggests prevents this from working.
+# %%{_bindir}/R CMD check %%{packname}
+
+%files
+%dir %{_datadir}/R/library/%{packname}
+%doc %{_datadir}/R/library/%{packname}/html
+%doc %{_datadir}/R/library/%{packname}/DESCRIPTION
+%doc %{_datadir}/R/library/%{packname}/NEWS
+%doc %{_datadir}/R/library/%{packname}/doc/
+%{_datadir}/R/library/%{packname}/INDEX
+%{_datadir}/R/library/%{packname}/NAMESPACE
+%{_datadir}/R/library/%{packname}/Meta
+%{_datadir}/R/library/%{packname}/R
+%{_datadir}/R/library/%{packname}/extdata/
+%{_datadir}/R/library/%{packname}/help
+%{_datadir}/R/library/%{packname}/unitTests/
+
+%changelog
+* Mon Jun  9 2014 Tom Callaway <spot at fedoraproject.org> - 1.0.2-1
+- initial package
diff --git a/sources b/sources
index e69de29..f057529 100644
--- a/sources
+++ b/sources
@@ -0,0 +1 @@
+82f4b1fefb6286ec3e31122dc561513c  GenomeInfoDb_1.0.2.tar.gz