[R-rtracklayer] Replace spec by sed
Pierre-YvesChibon
pingou at fedoraproject.org
Thu Jul 3 10:48:50 UTC 2014
commit c5659b4cda78881897c6804a87645a2d575bd82a
Author: Pierre-Yves Chibon <pingou at pingoured.fr>
Date: Thu Jul 3 12:48:47 2014 +0200
Replace spec by sed
R-rtracklayer.spec | 12 +++++++++---
1 files changed, 9 insertions(+), 3 deletions(-)
---
diff --git a/R-rtracklayer.spec b/R-rtracklayer.spec
index 60d3d38..713b364 100644
--- a/R-rtracklayer.spec
+++ b/R-rtracklayer.spec
@@ -2,14 +2,13 @@
Name: R-%{packname}
Version: 1.22.3
-Release: 2%{?dist}
+Release: 3%{?dist}
Summary: R interface to genome browsers and their annotation tracks
Group: Applications/Productivity
License: Artistic 2.0 and BSD
URL: http://www.bioconductor.org/packages/release/bioc/html/rtracklayer.html
Source0: http://www.bioconductor.org/packages/2.9/bioc/src/contrib/%{packname}_%{version}.tar.gz
Source1: rtracklayer_jimkent_license.txt
-Patch0: R-rtracklayer-1.20.0-no-zlibbioc.patch
Requires: R-core >= 3.0.0, texlive-latex, R-methods, R-RCurl >= 1.4.2, R-XML >= 1.98.0
Requires: R-IRanges >= 1.19.34, R-GenomicRanges >= 1.13.43, R-Biostrings >= 2.29.18
Requires: R-BSgenome >= 1.15.17, R-Rsamtools >= 1.13.1, R-XVector >= 0.1.3
@@ -26,7 +25,9 @@ modify the browser state, such as the current viewport.
%prep
%setup -c -q -n %{packname}
-%patch0 -p1 -b .no-zlibbioc
+sed -i -e 's|zlibbioc,||' rtracklayer/DESCRIPTION
+sed -i -e 's|import(zlibbioc)||' rtracklayer/NAMESPACE
+
# This email confirms that we have permission to use the Jim Kent
# copyrighted files under the BSD license.
cp %{SOURCE1} .
@@ -70,6 +71,11 @@ rm -rf %{buildroot}%{_libdir}/R/library/%{packname}/tests/quickload/T_species_Oc
%{_libdir}/R/library/%{packname}/unitTests/
%changelog
+* Thu Jul 03 2014 Pierre-Yves Chibon <pingou at pingoured.fr> - 1.22.3-3
+- Drop the patch fixing the zlibbioc import/dependency in favor of a couple of
+ sed commands
+
+
* Fri Jun 06 2014 Fedora Release Engineering <rel-eng at lists.fedoraproject.org> - 1.22.3-2
- Rebuilt for https://fedoraproject.org/wiki/Fedora_21_Mass_Rebuild
More information about the scm-commits
mailing list