[mmseq] Rework zlib patch

verdurin verdurin at fedoraproject.org
Sun Mar 1 22:46:46 UTC 2015


commit 8c347c07315b653c9f2452ea27d2c98ce09493c2
Author: bloch at verdurin.com <bloch at verdurin.com>
Date:   Sun Mar 1 22:46:23 2015 +0000

    Rework zlib patch

 mmseq-zlib.patch | 12 ++++++------
 1 file changed, 6 insertions(+), 6 deletions(-)
---
diff --git a/mmseq-zlib.patch b/mmseq-zlib.patch
index 27a3656..174d9f3 100644
--- a/mmseq-zlib.patch
+++ b/mmseq-zlib.patch
@@ -1,11 +1,11 @@
---- mmseq_0.9.18/Makefile	2011-12-16 14:44:46.000000000 +0000
-+++ mmseq_0.9.18.new/Makefile	2012-01-11 15:03:03.091319510 +0000
+--- mmseq_0.9.18/src/Makefile	2011-12-16 14:44:46.000000000 +0000
++++ mmseq_0.9.18.new/src/Makefile	2012-01-11 15:03:03.091319510 +0000
 @@ -11,7 +11,7 @@
+
  CC = gcc
  CXX = g++
- LIBS = -lgsl -lgslcblas 
--LIBS_B2H = -lboost_regex -lbam -lz
-+LIBS_B2H = -lboost_regex -lbam -Wl,--as-needed -lz
+-LIBS = -lgsl -lgslcblas -lboost_regex -lbam -lboost_iostreams -lz -llapack -lblas -lgfortran
++LIBS = -lgsl -lgslcblas -lboost_regex -lbam -lboost_iostreams -llapack -lblas -lgfortran -Wl,--as-needed -lz
  OMP = -fopenmp
  OPT = -O3
- 
+ OPTSAFE = -O2


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