verdurin pushed to samtools (epel7). "Updated to 0.1.7a"

[notifications at fedoraproject.org]

From 9f08810d62a87c4adbd18b10ebf735bda4558d0f Mon Sep 17 00:00:00 2001
From: ron <ron at fedoraproject.org>
Date: Mon, 30 Nov 2009 08:21:21 +0000
Subject: Updated to 0.1.7a


diff --git a/.cvsignore b/.cvsignore
index 3c27903..c62e948 100644
--- a/.cvsignore
+++ b/.cvsignore
@@ -1 +1 @@
-samtools-0.1.5c.tar.bz2
+samtools-0.1.7a.tar.bz2
diff --git a/import.log b/import.log
index 29d62f3..4a02c4e 100644
--- a/import.log
+++ b/import.log
@@ -1 +1,2 @@
 samtools-0_1_5c-3_fc10:HEAD:samtools-0.1.5c-3.fc10.src.rpm:1247425812
+samtools-0_1_7a-1_fc11:HEAD:samtools-0.1.7a-1.fc11.src.rpm:1259569235
diff --git a/samtools-0.1.5c-compilefix.patch b/samtools-0.1.5c-compilefix.patch
deleted file mode 100644
index aa76f69..0000000
--- a/samtools-0.1.5c-compilefix.patch
+++ /dev/null
@@ -1,11 +0,0 @@
-diff -up samtools-0.1.5c/misc/Makefile.compilefix samtools-0.1.5c/misc/Makefile
---- samtools-0.1.5c/misc/Makefile.compilefix	2009-07-11 15:33:04.000000000 +0200
-+++ samtools-0.1.5c/misc/Makefile	2009-07-11 15:33:22.000000000 +0200
-@@ -1,6 +1,6 @@
- CC=			gcc
- CXX=		g++
--CFLAGS=		-g -Wall -O2 -m64 #-arch ppc
-+CFLAGS=		-g -Wall -O2 #-m64 #-arch ppc
- CXXFLAGS=	$(CFLAGS)
- DFLAGS=		-D_FILE_OFFSET_BITS=64
- OBJS=		
diff --git a/samtools.spec b/samtools.spec
index 31bb2b1..f5d274f 100644
--- a/samtools.spec
+++ b/samtools.spec
@@ -1,13 +1,12 @@
 Name:		samtools
-Version:	0.1.5c
-Release:	4%{?dist}
+Version:	0.1.7a
+Release:	1%{?dist}
 Summary:	Tools for nucleotide sequence alignments in the SAM format
 
 Group:		Applications/Engineering
 License:	MIT
 URL:		http://samtools.sourceforge.net/
 Source0:	http://downloads.sourceforge.net/%{name}/%{name}-%{version}.tar.bz2
-Patch0:		samtools-0.1.5c-compilefix.patch
 BuildRoot:	%(mktemp -ud %{_tmppath}/%{name}-%{version}-%{release}-XXXXXX)
 
 BuildRequires:	zlib-devel >= 1.2.3
@@ -21,7 +20,6 @@ manipulating alignments in the SAM format.
 
 %prep
 %setup -q
-%patch0 -p1 -b .compilefix
 
 
 %build
@@ -41,9 +39,10 @@ mkdir -p %{buildroot}%{_mandir}/man1/
 cp -p samtools.1.gz %{buildroot}%{_mandir}/man1/
 
 cd misc/
-install -p blast2sam.pl bowtie2sam.pl export2sam.pl interpolate_sam.pl \
-  maq2sam-long maq2sam-short md5fa md5sum-lite novo2sam.pl samtools.pl \
-  soap2sam.pl wgsim wgsim_eval.pl zoom2sam.pl %{buildroot}%{_bindir}
+install -p blast2sam.pl bowtie2sam.pl export2sam.pl interpolate_sam.pl	\
+    maq2sam-long maq2sam-short md5fa md5sum-lite novo2sam.pl sam2vcf.pl	\
+    samtools.pl soap2sam.pl wgsim wgsim_eval.pl zoom2sam.pl		\
+    %{buildroot}%{_bindir}
 
 
 %clean
@@ -52,12 +51,15 @@ rm -rf %{buildroot}
 
 %files
 %defattr(-,root,root,-)
-%doc AUTHORS ChangeLog COPYING INSTALL NEWS source.dot examples/
+%doc AUTHORS ChangeLog COPYING INSTALL NEWS examples/ samtools.txt
 %{_bindir}/*
 %{_mandir}/man1/*
 
 
 %changelog
+* Mon Nov 30 2009 Rasmus Ory Nielsen <ron at ron.dk> - 0.1.7a-1
+- Updated to 0.1.7a.
+
 * Sun Jul 26 2009 Fedora Release Engineering <rel-eng at lists.fedoraproject.org> - 0.1.5c-4
 - Rebuilt for https://fedoraproject.org/wiki/Fedora_12_Mass_Rebuild
 
diff --git a/sources b/sources
index d58f549..40fd4ce 100644
--- a/sources
+++ b/sources
@@ -1 +1 @@
-62551fbad3f7c63c52fad99c3baf8580  samtools-0.1.5c.tar.bz2
+5e5aed8f0e0ec0009a3f0bb3e639c18b  samtools-0.1.7a.tar.bz2
-- 
cgit v0.10.2


	http://pkgs.fedoraproject.org/cgit/samtools.git/commit/?h=epel7&id=9f08810d62a87c4adbd18b10ebf735bda4558d0f