verdurin pushed to samtools (epel7). "Updated to 0.1.8"

[notifications at fedoraproject.org]

From 947c8431d9ec779a09eb0c7aff226e66a5844bdb Mon Sep 17 00:00:00 2001
From: Rasmus Ory Nielsen <ron at fedoraproject.org>
Date: Tue, 17 Aug 2010 10:34:01 +0200
Subject: Updated to 0.1.8


diff --git a/.gitignore b/.gitignore
index c62e948..7c27549 100644
--- a/.gitignore
+++ b/.gitignore
@@ -1 +1,2 @@
 samtools-0.1.7a.tar.bz2
+/samtools-0.1.8.tar.bz2
diff --git a/samtools.spec b/samtools.spec
index f5d274f..4dacfbf 100644
--- a/samtools.spec
+++ b/samtools.spec
@@ -1,5 +1,5 @@
 Name:		samtools
-Version:	0.1.7a
+Version:	0.1.8
 Release:	1%{?dist}
 Summary:	Tools for nucleotide sequence alignments in the SAM format
 
@@ -21,6 +21,9 @@ manipulating alignments in the SAM format.
 %prep
 %setup -q
 
+# fix wrong interpreter
+perl -pi -e "s[/software/bin/python][%{__python}]" misc/varfilter.py
+
 
 %build
 make CFLAGS="%{optflags}" samtools razip %{?_smp_mflags}
@@ -40,8 +43,9 @@ cp -p samtools.1.gz %{buildroot}%{_mandir}/man1/
 
 cd misc/
 install -p blast2sam.pl bowtie2sam.pl export2sam.pl interpolate_sam.pl	\
-    maq2sam-long maq2sam-short md5fa md5sum-lite novo2sam.pl sam2vcf.pl	\
-    samtools.pl soap2sam.pl wgsim wgsim_eval.pl zoom2sam.pl		\
+    maq2sam-long maq2sam-short md5fa md5sum-lite novo2sam.pl psl2sam.pl \
+    sam2vcf.pl samtools.pl soap2sam.pl varfilter.py wgsim wgsim_eval.pl \
+    zoom2sam.pl								\
     %{buildroot}%{_bindir}
 
 
@@ -57,6 +61,9 @@ rm -rf %{buildroot}
 
 
 %changelog
+* Tue Aug 17 2010 Rasmus Ory Nielsen <ron at ron.dk> - 0.1.8-1
+- Updated to 0.1.8.
+
 * Mon Nov 30 2009 Rasmus Ory Nielsen <ron at ron.dk> - 0.1.7a-1
 - Updated to 0.1.7a.
 
diff --git a/sources b/sources
index 40fd4ce..1ebcd9c 100644
--- a/sources
+++ b/sources
@@ -1 +1 @@
-5e5aed8f0e0ec0009a3f0bb3e639c18b  samtools-0.1.7a.tar.bz2
+db9e8d3acbe5dc040ff20a04a1bf1891  samtools-0.1.8.tar.bz2
-- 
cgit v0.10.2


	http://pkgs.fedoraproject.org/cgit/samtools.git/commit/?h=epel7&id=947c8431d9ec779a09eb0c7aff226e66a5844bdb