Fedora 11 updates-testing report
updates at fedoraproject.org
updates at fedoraproject.org
Mon Jun 7 22:34:09 UTC 2010
The following builds have been pushed to Fedora 11 updates-testing
R-Biobase-2.8.0-1.fc11
R-BufferedMatrix-1.12.0-1.fc11
R-BufferedMatrixMethods-1.12.0-1.fc11
R-DynDoc-1.26.0-1.fc11
R-GeneR-2.18.0-1.fc11
R-affy-1.26.1-1.fc11
R-affyio-1.16.0-1.fc11
R-maanova-1.18.0-1.fc11
R-multtest-2.4.0-1.fc11
R-qvalue-1.22.0-1.fc11
R-tkWidgets-1.26.0-1.fc11
R-widgetTools-1.26.0-1.fc11
clucene-0.9.21b-1.fc11
freeciv-2.2.0-2.fc11
globus-gram-job-manager-10.42-2.fc11
globus-gsi-callback-2.5-2.fc11
globus-gsi-cert-utils-6.5-2.fc11
globus-gsi-credential-3.3-2.fc11
globus-gsi-proxy-core-4.4-2.fc11
globus-gsi-proxy-ssl-2.2-2.fc11
globus-openssl-module-1.2-2.fc11
globus-proxy-utils-3.7-2.fc11
lcgdm-1.7.4.7-1.fc11
python-2.6-14.fc11
rear-1.7.25-1.fc11
voms-1.9.17.1-1.fc11
voms-mysql-plugin-3.1.3.2-1.fc11
Details about builds:
================================================================================
R-Biobase-2.8.0-1.fc11 (FEDORA-2010-9665)
Base functions for Bioconductor
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Update Information:
Update to the lastest bioconductor and R-2.11.0
--------------------------------------------------------------------------------
ChangeLog:
* Tue May 11 2010 pingou <pingou at pingoured.fr> 2.8.0-1
- Update to version 2.8.0
- Fix url to a more stable form
- Fix BR for latex
- Remove R on post/postun since there is no post/postun
--------------------------------------------------------------------------------
================================================================================
R-BufferedMatrix-1.12.0-1.fc11 (FEDORA-2010-9665)
A matrix data storage object method from bioconductor
--------------------------------------------------------------------------------
Update Information:
Update to the lastest bioconductor and R-2.11.0
--------------------------------------------------------------------------------
ChangeLog:
* Tue May 11 2010 pingou <pingou at pingoured.fr> 1.12.0-1
- Update to version 1.12.0
- Fix R and BR (R-core tex(latex))
- Remove R for post/postun
--------------------------------------------------------------------------------
================================================================================
R-BufferedMatrixMethods-1.12.0-1.fc11 (FEDORA-2010-9665)
Microarray Data related methods that utlize BufferedMatrix
--------------------------------------------------------------------------------
Update Information:
Update to the lastest bioconductor and R-2.11.0
--------------------------------------------------------------------------------
ChangeLog:
* Tue May 11 2010 pingou <pingou at pingoured.fr> 1.12.0-1
- Update to version 1.12.0
- Fix R latex/R-core
--------------------------------------------------------------------------------
================================================================================
R-DynDoc-1.26.0-1.fc11 (FEDORA-2010-9665)
Functions for dynamic documents
--------------------------------------------------------------------------------
Update Information:
Update to the lastest bioconductor and R-2.11.0
--------------------------------------------------------------------------------
ChangeLog:
* Tue May 11 2010 pingou <pingou at pingoured.fr> 1.26.0-1
- Update to version 1.26.0
- Update url and source0 to more stable link
- Requires R-core instead of R
- Requires tex(latex)
--------------------------------------------------------------------------------
================================================================================
R-GeneR-2.18.0-1.fc11 (FEDORA-2010-9665)
R for genes and sequences analysis
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Update Information:
Update to the lastest bioconductor and R-2.11.0
--------------------------------------------------------------------------------
ChangeLog:
* Tue May 11 2010 pingou <pingou at pingoured.fr> 2.18.0-1
- Update to version 2.18.0
- Fix Requires and BuildRequires
- Fix URL to a more stable version
* Fri Jan 15 2010 pingou <pingou at pingoured.fr> 2.16.0-2
- Fix the url and source0
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================================================================================
R-affy-1.26.1-1.fc11 (FEDORA-2010-9665)
Methods for Affymetrix Oligonucleotide Arrays
--------------------------------------------------------------------------------
Update Information:
Update to the lastest bioconductor and R-2.11.0
--------------------------------------------------------------------------------
ChangeLog:
* Tue May 11 2010 pingou <pingou at pingoured.fr> 1.26.1-1
- Update to version 1.26.1
- Fix url to a more stable form
- Remove post/postun R since there is no post/postun
--------------------------------------------------------------------------------
================================================================================
R-affyio-1.16.0-1.fc11 (FEDORA-2010-9665)
Tools for parsing Affymetrix data files
--------------------------------------------------------------------------------
Update Information:
Update to the lastest bioconductor and R-2.11.0
--------------------------------------------------------------------------------
ChangeLog:
* Tue May 11 2010 pingou <pingou at pingoured.fr> 1.16.0-1
- Update to version 1.16.0
- Fix url to a more stable form
- Remove R on post/postun since there is no post/postun
--------------------------------------------------------------------------------
================================================================================
R-maanova-1.18.0-1.fc11 (FEDORA-2010-9665)
Analysis of N-dye Micro Array using mixed model effect
--------------------------------------------------------------------------------
Update Information:
Update to the lastest bioconductor and R-2.11.0
--------------------------------------------------------------------------------
ChangeLog:
* Tue May 11 2010 pingou <pingou at pingoured.fr> 1.18.0-1
- Update to version 1.18.0
- Fix url to a more stable form
- Fix BR to R-devel
- Fix R to R-core
--------------------------------------------------------------------------------
================================================================================
R-multtest-2.4.0-1.fc11 (FEDORA-2010-9665)
Multiple hypothesis testing library from Bioconductor
--------------------------------------------------------------------------------
Update Information:
Update to the lastest bioconductor and R-2.11.0
--------------------------------------------------------------------------------
ChangeLog:
* Tue May 11 2010 pingou <pingou at pingoured.fr> 2.4.0-1
- Update to version 2.4.0
- Fix url to a more stable form
- Fix R on R-core
- Remove R on post/postun
--------------------------------------------------------------------------------
================================================================================
R-qvalue-1.22.0-1.fc11 (FEDORA-2010-9665)
Q-value estimation for false discovery rate control
--------------------------------------------------------------------------------
Update Information:
Update to the lastest bioconductor and R-2.11.0
--------------------------------------------------------------------------------
ChangeLog:
* Tue May 11 2010 pingou <pingou at pingoured.fr> 1.22.0-1
- Update to version 1.22.0
- Fix url to a more stable form
- Remove R on post an postun since there are no post/postun
--------------------------------------------------------------------------------
================================================================================
R-tkWidgets-1.26.0-1.fc11 (FEDORA-2010-9665)
Widgets to provide user interfaces from bioconductor
--------------------------------------------------------------------------------
Update Information:
Update to the lastest bioconductor and R-2.11.0
--------------------------------------------------------------------------------
ChangeLog:
* Tue May 11 2010 pingou <pingou at pingoured.fr> 1.26.0-1
- Update to version 1.26.0
- Fix url to a more stable form
- Fix R to R-core
- Fix description (a bit long)
- Remove R post/postun
--------------------------------------------------------------------------------
================================================================================
R-widgetTools-1.26.0-1.fc11 (FEDORA-2010-9665)
Bioconductor tools to support tcltk widgets
--------------------------------------------------------------------------------
Update Information:
Update to the lastest bioconductor and R-2.11.0
--------------------------------------------------------------------------------
ChangeLog:
* Tue May 11 2010 pingou <pingou at pingoured.fr> 1.26.0-1
- Update to version 1.26.0
- Fix url to more stable version
- Remove requires(post/postun) since there is no post/postun anymore
--------------------------------------------------------------------------------
================================================================================
clucene-0.9.21b-1.fc11 (FEDORA-2010-9653)
A C++ port of Lucene
--------------------------------------------------------------------------------
Update Information:
CLucene 0.9.21b contains a binary compatible fix which fixes a potential
segfault when used in an multithreaded application
--------------------------------------------------------------------------------
ChangeLog:
* Sun Jun 6 2010 Robert Scheck <robert at fedoraproject.org> 0.9.21b-1
- Update to 0.9.21b
* Wed Nov 4 2009 Dennis Gilmore <dennis at ausil.us> - 0.9.21-5
- disable 'make check on sparc64 along with ppc64 and s390x
* Fri Jul 24 2009 Fedora Release Engineering <rel-eng at lists.fedoraproject.org> - 0.9.21-4
- Rebuilt for https://fedoraproject.org/wiki/Fedora_12_Mass_Rebuild
--------------------------------------------------------------------------------
================================================================================
freeciv-2.2.0-2.fc11 (FEDORA-2010-9635)
A multi-player strategy game
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Update Information:
Make impossible to access operating system from Lua scripts
--------------------------------------------------------------------------------
ChangeLog:
* Sun Jun 6 2010 Thomas Janssen <thomasj at fedoraproject.org> 2.2.0-2
- security fix http://gna.org/bugs/?15624
- #600742 #600743 #600744
--------------------------------------------------------------------------------
References:
[ 1 ] Bug #600742 - Freeciv: Make impossible to access operating system from Lua scripts (security hardening)
https://bugzilla.redhat.com/show_bug.cgi?id=600742
[ 2 ] Bug #600743 - Freeciv: Make impossible to access operating system from Lua scripts (security hardening)
https://bugzilla.redhat.com/show_bug.cgi?id=600743
[ 3 ] Bug #600744 - Freeciv: Make impossible to access operating system from Lua scripts (security hardening)
https://bugzilla.redhat.com/show_bug.cgi?id=600744
--------------------------------------------------------------------------------
================================================================================
globus-gram-job-manager-10.42-2.fc11 (FEDORA-2010-9609)
Globus Toolkit - GRAM Jobmanager
--------------------------------------------------------------------------------
Update Information:
This update contains a fix for the pollution of the ssl object space due to re-
registration of objects already defined in the openssl library.
http://bugzilla.globus.org/bugzilla/show_bug.cgi?id=7032
--------------------------------------------------------------------------------
ChangeLog:
* Sat Jun 5 2010 Mattias Ellert <mattias.ellert at fysast.uu.se> - 10.42-2
- Additional portability fixes
--------------------------------------------------------------------------------
================================================================================
globus-gsi-callback-2.5-2.fc11 (FEDORA-2010-9609)
Globus Toolkit - Globus GSI Callback Library
--------------------------------------------------------------------------------
Update Information:
This update contains a fix for the pollution of the ssl object space due to re-
registration of objects already defined in the openssl library.
http://bugzilla.globus.org/bugzilla/show_bug.cgi?id=7032
--------------------------------------------------------------------------------
ChangeLog:
* Mon May 31 2010 Mattias Ellert <mattias.ellert at fysast.uu.se> - 2.5-2
- Fix OID registration pollution
--------------------------------------------------------------------------------
================================================================================
globus-gsi-cert-utils-6.5-2.fc11 (FEDORA-2010-9609)
Globus Toolkit - Globus GSI Cert Utils Library
--------------------------------------------------------------------------------
Update Information:
This update contains a fix for the pollution of the ssl object space due to re-
registration of objects already defined in the openssl library.
http://bugzilla.globus.org/bugzilla/show_bug.cgi?id=7032
--------------------------------------------------------------------------------
ChangeLog:
* Mon May 31 2010 Mattias Ellert <mattias.ellert at fysast.uu.se> - 6.5-2
- Fix OID registration pollution
--------------------------------------------------------------------------------
================================================================================
globus-gsi-credential-3.3-2.fc11 (FEDORA-2010-9609)
Globus Toolkit - Globus GSI Credential Library
--------------------------------------------------------------------------------
Update Information:
This update contains a fix for the pollution of the ssl object space due to re-
registration of objects already defined in the openssl library.
http://bugzilla.globus.org/bugzilla/show_bug.cgi?id=7032
--------------------------------------------------------------------------------
ChangeLog:
* Mon May 31 2010 Mattias Ellert <mattias.ellert at fysast.uu.se> - 3.3-2
- Fix OID registration pollution
--------------------------------------------------------------------------------
================================================================================
globus-gsi-proxy-core-4.4-2.fc11 (FEDORA-2010-9609)
Globus Toolkit - Globus GSI Proxy Core Library
--------------------------------------------------------------------------------
Update Information:
This update contains a fix for the pollution of the ssl object space due to re-
registration of objects already defined in the openssl library.
http://bugzilla.globus.org/bugzilla/show_bug.cgi?id=7032
--------------------------------------------------------------------------------
ChangeLog:
* Mon May 31 2010 Mattias Ellert <mattias.ellert at fysast.uu.se> - 4.4-2
- Fix OID registration pollution
--------------------------------------------------------------------------------
================================================================================
globus-gsi-proxy-ssl-2.2-2.fc11 (FEDORA-2010-9609)
Globus Toolkit - Globus GSI Proxy SSL Library
--------------------------------------------------------------------------------
Update Information:
This update contains a fix for the pollution of the ssl object space due to re-
registration of objects already defined in the openssl library.
http://bugzilla.globus.org/bugzilla/show_bug.cgi?id=7032
--------------------------------------------------------------------------------
ChangeLog:
* Mon May 31 2010 Mattias Ellert <mattias.ellert at fysast.uu.se> - 2.2-2
- Fix OID registration pollution
--------------------------------------------------------------------------------
================================================================================
globus-openssl-module-1.2-2.fc11 (FEDORA-2010-9609)
Globus Toolkit - Globus OpenSSL Module Wrapper
--------------------------------------------------------------------------------
Update Information:
This update contains a fix for the pollution of the ssl object space due to re-
registration of objects already defined in the openssl library.
http://bugzilla.globus.org/bugzilla/show_bug.cgi?id=7032
--------------------------------------------------------------------------------
ChangeLog:
* Mon May 31 2010 Mattias Ellert <mattias.ellert at fysast.uu.se> - 1.2-2
- Fix OID registration pollution
--------------------------------------------------------------------------------
================================================================================
globus-proxy-utils-3.7-2.fc11 (FEDORA-2010-9609)
Globus Toolkit - Globus GSI Proxy Utility Programs
--------------------------------------------------------------------------------
Update Information:
This update contains a fix for the pollution of the ssl object space due to re-
registration of objects already defined in the openssl library.
http://bugzilla.globus.org/bugzilla/show_bug.cgi?id=7032
--------------------------------------------------------------------------------
ChangeLog:
* Mon May 31 2010 Mattias Ellert <mattias.ellert at fysast.uu.se> - 3.7-2
- Fix OID registration pollution
--------------------------------------------------------------------------------
================================================================================
lcgdm-1.7.4.7-1.fc11 (FEDORA-2010-9579)
LHC Computing Grid Data Management
--------------------------------------------------------------------------------
Update Information:
New version from gLite.
--------------------------------------------------------------------------------
ChangeLog:
* Sun Jun 6 2010 Mattias Ellert <mattias.ellert at fysast.uu.se> - 1.7.4.7-1
- Update to version 1.7.4.7
- This version works with gsoap versions > 2.7.15
- Dropped patches lcgdm-typo.patch and lcgdm-man.patch (fixed upstream)
* Tue Jun 1 2010 Marcela Maslanova <mmaslano at redhat.com> - 1.7.4.4-3
- Mass rebuild with perl-5.12.0
--------------------------------------------------------------------------------
================================================================================
python-2.6-14.fc11 (FEDORA-2010-9581)
An interpreted, interactive, object-oriented programming language
--------------------------------------------------------------------------------
ChangeLog:
* Fri Jun 4 2010 David Malcolm <dmalcolm at redhat.com> - 2.6-14
- rebuild
* Fri Jun 4 2010 David Malcolm <dmalcolm at redhat.com> - 2.6-13
- ensure that the compiler is invoked with "-fwrapv" (rhbz#594819)
- CVE-2010-1634: fix various integer overflow checks in the audioop
module (patch 116)
- CVE-2010-2089: further checks within the audioop module (patch 117)
- CVE-2008-5983: the new PySys_SetArgvEx entry point from r81399 (patch 118)
--------------------------------------------------------------------------------
References:
[ 1 ] Bug #590690 - CVE-2010-1634 python: audioop: incorrect integer overflow checks
https://bugzilla.redhat.com/show_bug.cgi?id=590690
[ 2 ] Bug #598197 - CVE-2010-2089 Python: Memory corruption in audioop module
https://bugzilla.redhat.com/show_bug.cgi?id=598197
[ 3 ] Bug #482814 - CVE-2008-5983 python: untrusted python modules search path
https://bugzilla.redhat.com/show_bug.cgi?id=482814
--------------------------------------------------------------------------------
================================================================================
rear-1.7.25-1.fc11 (FEDORA-2010-9667)
Relax and Recover (ReaR) is a Linux Disaster Recovery framework
--------------------------------------------------------------------------------
Update Information:
Release Notes for Relax and Recover (rear) 1.7.25 released at 2010-06-04: *
fix for bug report https://bugzilla.redhat.com/show_bug.cgi?id=600217 * exclude
the required package "syslinux" on ppc/ppc64 in the rear.spec file
--------------------------------------------------------------------------------
ChangeLog:
* Fri Jun 4 2010 Gratien D'haese <gdha at sourceforge.net> - 1.7.25-1
- added the %ifarch part for syslinux to avoid warning on ppc/ppc64
- fixed bugzilla 600217 (missing Fedora links)
* Sun May 9 2010 Gratien D'haese <gdha at sourceforge.net> - 1.7.24-1
- added release entry
* Sat Jan 9 2010 Gratien D'haese <gdha at sourceforge.net> - 1.7.23-1
- added release entry
* Mon Nov 16 2009 Gratien D'haese <gdha at sourceforge.net> - 1.7.22-1
- Changed Requires fields for Fedora 10 and higher
--------------------------------------------------------------------------------
References:
[ 1 ] Bug #600217 - Fedora link missing in restore, pack and finalize sub-directories
https://bugzilla.redhat.com/show_bug.cgi?id=600217
--------------------------------------------------------------------------------
================================================================================
voms-1.9.17.1-1.fc11 (FEDORA-2010-9560)
Virtual Organization Membership Service
--------------------------------------------------------------------------------
Update Information:
New version from gLite.
--------------------------------------------------------------------------------
ChangeLog:
* Sat Jun 5 2010 Mattias Ellert <mattias.ellert at fysast.uu.se> - 1.9.17.1-1
- Upstream 1.9.17.1 (CVS tag glite-security-voms_R_1_9_17_1)
- Drop patches voms-db-method.patch and voms-thread.patch (accepted upstream)
--------------------------------------------------------------------------------
================================================================================
voms-mysql-plugin-3.1.3.2-1.fc11 (FEDORA-2010-9560)
VOMS server plugin for MySQL
--------------------------------------------------------------------------------
Update Information:
New version from gLite.
--------------------------------------------------------------------------------
ChangeLog:
* Sun Jun 6 2010 Mattias Ellert <mattias.ellert at fysast.uu.se> - 3.1.3.2-1
- Update to version 3.1.3.2
- Drop all patches (accepted upstream)
--------------------------------------------------------------------------------
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