Fedora 14 updates-testing report

[José Matos]

On Thursday 28 October 2010 23:24:12 updates at fedoraproject.org wrote:
> ===========================================================================
> ===== hdf5-1.8.5.patch1-4.fc14 (FEDORA-2010-16889)
>  A general purpose library and file format for storing scientific data
> ---------------------------------------------------------------------------
> ----- Update Information:
> 
> Build parallel hdf5 packages for mpich2 and openmpi.
> ---------------------------------------------------------------------------
> ----- ChangeLog:
> 
> * Wed Oct 27 2010 Orion Poplawski <orion at cora.nwra.com> 1.8.5.patch1-4
> - Really fixup all permissions
> * Wed Oct 27 2010 Orion Poplawski <orion at cora.nwra.com> 1.8.5.patch1-3
> - Add docs to the mpi packages
> - Fixup example source file permissions
> * Tue Oct 26 2010 Orion Poplawski <orion at cora.nwra.com> 1.8.5.patch1-2
> - Build parallel hdf5 packages for mpich2 and openmpi
> - Rework multiarch support and drop multiarch patch
> * Tue Sep  7 2010 Orion Poplawski <orion at cora.nwra.com> 1.8.5.patch1-1
> - Update to 1.8.5-patch1
> * Wed Jun 23 2010 Orion Poplawski <orion at cora.nwra.com> 1.8.5-4
> - Re-add rebased tstlite patch - not fixed yet
> * Wed Jun 23 2010 Orion Poplawski <orion at cora.nwra.com> 1.8.5-3
> - Update longdouble patch for 1.8.5
> * Wed Jun 23 2010 Orion Poplawski <orion at cora.nwra.com> 1.8.5-2
> - Re-add longdouble patch on ppc64 for EPEL builds
> ---------------------------------------------------------------------------
> ----- References:
> 
>   [ 1 ] Bug #646043 - Parallel Support for HDF5
>         https://bugzilla.redhat.com/show_bug.cgi?id=646043

This update breaks R-hdf5 that requires hdf5==1.8.5

yum tries to satisfy this dependency loading the corresponding i686 library.

Resolving Dependencies
--> Running transaction check
--> Processing Dependency: hdf5 = 1.8.5 for package: R-
hdf5-1.6.9-8.fc14.x86_64
---> Package hdf5.x86_64 0:1.8.5.patch1-4.fc14 set to be updated
---> Package hdf5-devel.x86_64 0:1.8.5.patch1-4.fc14 set to be updated
--> Running transaction check
---> Package hdf5.i686 0:1.8.5-1.fc14 set to be installed
--> Processing Dependency: libgfortran.so.3 for package: 
hdf5-1.8.5-1.fc14.i686
--> Processing Dependency: libgfortran.so.3(GFORTRAN_1.0) for package: 
hdf5-1.8.5-1.fc14.i686
--> Running transaction check
---> Package libgfortran.i686 0:4.5.1-4.fc14 set to be installed
--> Finished Dependency Resolution

Dependencies Resolved

=================================================================================================================================================================================================================
 Package                                         Arch                                       
Version                                                    Repository                                           
Size
=================================================================================================================================================================================================================
Updating:
 hdf5                                            x86_64                                     
1.8.5.patch1-4.fc14                                        updates-testing                                     
1.4 M
 hdf5-devel                                      x86_64                                     
1.8.5.patch1-4.fc14                                        updates-testing                                     
569 k
Installing for dependencies:
 hdf5                                            i686                                       
1.8.5-1.fc14                                               fedora                                              
1.2 M
 libgfortran                                     i686                                       
4.5.1-4.fc14                                               fedora                                              
199 k

Transaction Summary
=================================================================================================================================================================================================================
Install       2 Package(s)
Upgrade       2 Package(s)

Total download size: 3.3 M
Is this ok [y/N]: n

-- 
José Abílio