Fedora 16 Update: R-xtable-1.6.0-1.fc16
by updates@fedoraproject.org
--------------------------------------------------------------------------------
Fedora Update Notification
FEDORA-2011-15910
2011-11-15 23:36:23
--------------------------------------------------------------------------------
Name : R-xtable
Product : Fedora 16
Version : 1.6.0
Release : 1.fc16
URL : http://cran.r-project.org/web/packages/xtable/index.html
Summary : Export tables to LaTeX or HTML
Description :
Coerce data to LaTeX and HTML tables.
--------------------------------------------------------------------------------
Update Information:
Update R to 2.14.0. This required a mass rebuild of R components.
--------------------------------------------------------------------------------
ChangeLog:
* Wed Nov 9 2011 Tom Callaway <spot(a)fedoraproject.org> - 1.6.0-1
- update to 1.6-0
--------------------------------------------------------------------------------
References:
[ 1 ] Bug #751003 - New version of R 2.14.0 is available
https://bugzilla.redhat.com/show_bug.cgi?id=751003
[ 2 ] Bug #753188 - Review Request: R-rtracklayer - R interface to genome browsers and their annotation tracks
https://bugzilla.redhat.com/show_bug.cgi?id=753188
[ 3 ] Bug #753181 - Review Request: R-RCurl - General network (HTTP/FTP) client interface for R
https://bugzilla.redhat.com/show_bug.cgi?id=753181
[ 4 ] Bug #753182 - Review Request: R-biomaRt - R Interface to BioMart databases
https://bugzilla.redhat.com/show_bug.cgi?id=753182
[ 5 ] Bug #753185 - Review Request: R-Rcompression - R Package for in-memory compression
https://bugzilla.redhat.com/show_bug.cgi?id=753185
--------------------------------------------------------------------------------
This update can be installed with the "yum" update program. Use
su -c 'yum update R-xtable' at the command line.
For more information, refer to "Managing Software with yum",
available at http://docs.fedoraproject.org/yum/.
All packages are signed with the Fedora Project GPG key. More details on the
GPG keys used by the Fedora Project can be found at
https://fedoraproject.org/keys
--------------------------------------------------------------------------------
12 years, 5 months
Fedora 16 Update: R-Biobase-2.14.0-2.fc16
by updates@fedoraproject.org
--------------------------------------------------------------------------------
Fedora Update Notification
FEDORA-2011-15910
2011-11-15 23:36:23
--------------------------------------------------------------------------------
Name : R-Biobase
Product : Fedora 16
Version : 2.14.0
Release : 2.fc16
URL : http://bioconductor.org/packages/release/bioc/html/Biobase.html
Summary : Base functions for Bioconductor
Description :
Base functions for Bioconductor (bioconductor.org). Biobase provides
functions that are needed by many other Bioconductor packages or which
replace R functions.
--------------------------------------------------------------------------------
Update Information:
Update R to 2.14.0. This required a mass rebuild of R components.
--------------------------------------------------------------------------------
ChangeLog:
* Wed Nov 9 2011 Tom Callaway <spot(a)fedoraproject.org> 2.14.0-2
- rebuild for R 2.14.0
* Thu Nov 3 2011 pingou <pingou(a)pingoured.fr> 2.14.0-1
- Update to version 2.14.0
--------------------------------------------------------------------------------
References:
[ 1 ] Bug #751003 - New version of R 2.14.0 is available
https://bugzilla.redhat.com/show_bug.cgi?id=751003
[ 2 ] Bug #753188 - Review Request: R-rtracklayer - R interface to genome browsers and their annotation tracks
https://bugzilla.redhat.com/show_bug.cgi?id=753188
[ 3 ] Bug #753181 - Review Request: R-RCurl - General network (HTTP/FTP) client interface for R
https://bugzilla.redhat.com/show_bug.cgi?id=753181
[ 4 ] Bug #753182 - Review Request: R-biomaRt - R Interface to BioMart databases
https://bugzilla.redhat.com/show_bug.cgi?id=753182
[ 5 ] Bug #753185 - Review Request: R-Rcompression - R Package for in-memory compression
https://bugzilla.redhat.com/show_bug.cgi?id=753185
--------------------------------------------------------------------------------
This update can be installed with the "yum" update program. Use
su -c 'yum update R-Biobase' at the command line.
For more information, refer to "Managing Software with yum",
available at http://docs.fedoraproject.org/yum/.
All packages are signed with the Fedora Project GPG key. More details on the
GPG keys used by the Fedora Project can be found at
https://fedoraproject.org/keys
--------------------------------------------------------------------------------
12 years, 5 months
Fedora 16 Update: R-GenomicRanges-1.6.2-1.fc16
by updates@fedoraproject.org
--------------------------------------------------------------------------------
Fedora Update Notification
FEDORA-2011-15910
2011-11-15 23:36:23
--------------------------------------------------------------------------------
Name : R-GenomicRanges
Product : Fedora 16
Version : 1.6.2
Release : 1.fc16
URL : http://www.bioconductor.org/packages/release/bioc/html/GenomicRanges.html
Summary : Representation and manipulation of genomic intervals
Description :
The ability to efficiently store genomic annotations and alignments is
playing a central role when it comes to analyze high-throughput sequencing
data (a.k.a. NGS data). The package defines general purpose containers for
storing genomic intervals as well as more specialized containers for
storing alignments against a reference genome.
--------------------------------------------------------------------------------
Update Information:
Update R to 2.14.0. This required a mass rebuild of R components.
--------------------------------------------------------------------------------
ChangeLog:
* Wed Nov 9 2011 Tom Callaway <spot(a)fedoraproject.org> 1.6.2-1
- update to 1.6.2
--------------------------------------------------------------------------------
References:
[ 1 ] Bug #751003 - New version of R 2.14.0 is available
https://bugzilla.redhat.com/show_bug.cgi?id=751003
[ 2 ] Bug #753188 - Review Request: R-rtracklayer - R interface to genome browsers and their annotation tracks
https://bugzilla.redhat.com/show_bug.cgi?id=753188
[ 3 ] Bug #753181 - Review Request: R-RCurl - General network (HTTP/FTP) client interface for R
https://bugzilla.redhat.com/show_bug.cgi?id=753181
[ 4 ] Bug #753182 - Review Request: R-biomaRt - R Interface to BioMart databases
https://bugzilla.redhat.com/show_bug.cgi?id=753182
[ 5 ] Bug #753185 - Review Request: R-Rcompression - R Package for in-memory compression
https://bugzilla.redhat.com/show_bug.cgi?id=753185
--------------------------------------------------------------------------------
This update can be installed with the "yum" update program. Use
su -c 'yum update R-GenomicRanges' at the command line.
For more information, refer to "Managing Software with yum",
available at http://docs.fedoraproject.org/yum/.
All packages are signed with the Fedora Project GPG key. More details on the
GPG keys used by the Fedora Project can be found at
https://fedoraproject.org/keys
--------------------------------------------------------------------------------
12 years, 5 months
Fedora 16 Update: R-IRanges-1.12.1-1.fc16
by updates@fedoraproject.org
--------------------------------------------------------------------------------
Fedora Update Notification
FEDORA-2011-15910
2011-11-15 23:36:23
--------------------------------------------------------------------------------
Name : R-IRanges
Product : Fedora 16
Version : 1.12.1
Release : 1.fc16
URL : http://bioconductor.org/packages/release/bioc/html/IRanges.html
Summary : Low-level containers for storing sets of integer ranges
Description :
The IRanges class and its extensions are low-level containers
for storing sets of integer ranges. A typical use of these containers
in biology is for representing a set of chromosome regions.
More specific extensions of the IRanges class will typically
allow the storage of additional information attached to each
chromosome region as well as a hierarchical relationship between
these regions.
--------------------------------------------------------------------------------
Update Information:
Update R to 2.14.0. This required a mass rebuild of R components.
--------------------------------------------------------------------------------
ChangeLog:
* Wed Nov 9 2011 Tom Callaway <spot(a)fedoraproject.org> 1.12.1-1
- update to 1.12.1
--------------------------------------------------------------------------------
References:
[ 1 ] Bug #751003 - New version of R 2.14.0 is available
https://bugzilla.redhat.com/show_bug.cgi?id=751003
[ 2 ] Bug #753188 - Review Request: R-rtracklayer - R interface to genome browsers and their annotation tracks
https://bugzilla.redhat.com/show_bug.cgi?id=753188
[ 3 ] Bug #753181 - Review Request: R-RCurl - General network (HTTP/FTP) client interface for R
https://bugzilla.redhat.com/show_bug.cgi?id=753181
[ 4 ] Bug #753182 - Review Request: R-biomaRt - R Interface to BioMart databases
https://bugzilla.redhat.com/show_bug.cgi?id=753182
[ 5 ] Bug #753185 - Review Request: R-Rcompression - R Package for in-memory compression
https://bugzilla.redhat.com/show_bug.cgi?id=753185
--------------------------------------------------------------------------------
This update can be installed with the "yum" update program. Use
su -c 'yum update R-IRanges' at the command line.
For more information, refer to "Managing Software with yum",
available at http://docs.fedoraproject.org/yum/.
All packages are signed with the Fedora Project GPG key. More details on the
GPG keys used by the Fedora Project can be found at
https://fedoraproject.org/keys
--------------------------------------------------------------------------------
12 years, 5 months
Fedora 16 Update: R-biglm-0.8-1.fc16
by updates@fedoraproject.org
--------------------------------------------------------------------------------
Fedora Update Notification
FEDORA-2011-15910
2011-11-15 23:36:23
--------------------------------------------------------------------------------
Name : R-biglm
Product : Fedora 16
Version : 0.8
Release : 1.fc16
URL : http://cran.r-project.org/web/packages/biglm/index.html
Summary : Bounded memory linear and generalized linear models
Description :
Regression for data too large to fit in memory.
--------------------------------------------------------------------------------
Update Information:
Update R to 2.14.0. This required a mass rebuild of R components.
--------------------------------------------------------------------------------
ChangeLog:
* Wed Nov 9 2011 Tom Callaway <spot(a)fedoraproject.org> - 0.8-1
- update to 0.8
--------------------------------------------------------------------------------
References:
[ 1 ] Bug #751003 - New version of R 2.14.0 is available
https://bugzilla.redhat.com/show_bug.cgi?id=751003
[ 2 ] Bug #753188 - Review Request: R-rtracklayer - R interface to genome browsers and their annotation tracks
https://bugzilla.redhat.com/show_bug.cgi?id=753188
[ 3 ] Bug #753181 - Review Request: R-RCurl - General network (HTTP/FTP) client interface for R
https://bugzilla.redhat.com/show_bug.cgi?id=753181
[ 4 ] Bug #753182 - Review Request: R-biomaRt - R Interface to BioMart databases
https://bugzilla.redhat.com/show_bug.cgi?id=753182
[ 5 ] Bug #753185 - Review Request: R-Rcompression - R Package for in-memory compression
https://bugzilla.redhat.com/show_bug.cgi?id=753185
--------------------------------------------------------------------------------
This update can be installed with the "yum" update program. Use
su -c 'yum update R-biglm' at the command line.
For more information, refer to "Managing Software with yum",
available at http://docs.fedoraproject.org/yum/.
All packages are signed with the Fedora Project GPG key. More details on the
GPG keys used by the Fedora Project can be found at
https://fedoraproject.org/keys
--------------------------------------------------------------------------------
12 years, 5 months
Fedora 16 Update: R-affy-1.32.0-1.fc16
by updates@fedoraproject.org
--------------------------------------------------------------------------------
Fedora Update Notification
FEDORA-2011-15910
2011-11-15 23:36:23
--------------------------------------------------------------------------------
Name : R-affy
Product : Fedora 16
Version : 1.32.0
Release : 1.fc16
URL : http://bioconductor.org/packages/2.9/bioc/html/affy.html
Summary : Methods for Affymetrix Oligonucleotide Arrays
Description :
The package contains functions for exploratory oligonucleotide array
analysis.
The dependancy to tkWidgets only concerns few convenience
functions. 'affy' is fully functional without it.
--------------------------------------------------------------------------------
Update Information:
Update R to 2.14.0. This required a mass rebuild of R components.
--------------------------------------------------------------------------------
ChangeLog:
* Wed Nov 9 2011 Tom Callaway <spot(a)fedoraproject.org> 1.32.0-1
- update to 1.32.0
--------------------------------------------------------------------------------
References:
[ 1 ] Bug #751003 - New version of R 2.14.0 is available
https://bugzilla.redhat.com/show_bug.cgi?id=751003
[ 2 ] Bug #753188 - Review Request: R-rtracklayer - R interface to genome browsers and their annotation tracks
https://bugzilla.redhat.com/show_bug.cgi?id=753188
[ 3 ] Bug #753181 - Review Request: R-RCurl - General network (HTTP/FTP) client interface for R
https://bugzilla.redhat.com/show_bug.cgi?id=753181
[ 4 ] Bug #753182 - Review Request: R-biomaRt - R Interface to BioMart databases
https://bugzilla.redhat.com/show_bug.cgi?id=753182
[ 5 ] Bug #753185 - Review Request: R-Rcompression - R Package for in-memory compression
https://bugzilla.redhat.com/show_bug.cgi?id=753185
--------------------------------------------------------------------------------
This update can be installed with the "yum" update program. Use
su -c 'yum update R-affy' at the command line.
For more information, refer to "Managing Software with yum",
available at http://docs.fedoraproject.org/yum/.
All packages are signed with the Fedora Project GPG key. More details on the
GPG keys used by the Fedora Project can be found at
https://fedoraproject.org/keys
--------------------------------------------------------------------------------
12 years, 5 months
Fedora 16 Update: R-timeDate-2131.00-1.fc16
by updates@fedoraproject.org
--------------------------------------------------------------------------------
Fedora Update Notification
FEDORA-2011-15910
2011-11-15 23:36:23
--------------------------------------------------------------------------------
Name : R-timeDate
Product : Fedora 16
Version : 2131.00
Release : 1.fc16
URL : http://cran.r-project.org/web/packages/timeDate/
Summary : Rmetrics - chronological and calendrical objects
Description :
Environment for teaching Financial Engineering and Computational Finance.
--------------------------------------------------------------------------------
Update Information:
Update R to 2.14.0. This required a mass rebuild of R components.
--------------------------------------------------------------------------------
ChangeLog:
* Wed Nov 9 2011 Tom Callaway <spot(a)fedoraproject.org> 2131.00-1
- update to 2131.00
--------------------------------------------------------------------------------
References:
[ 1 ] Bug #751003 - New version of R 2.14.0 is available
https://bugzilla.redhat.com/show_bug.cgi?id=751003
[ 2 ] Bug #753188 - Review Request: R-rtracklayer - R interface to genome browsers and their annotation tracks
https://bugzilla.redhat.com/show_bug.cgi?id=753188
[ 3 ] Bug #753181 - Review Request: R-RCurl - General network (HTTP/FTP) client interface for R
https://bugzilla.redhat.com/show_bug.cgi?id=753181
[ 4 ] Bug #753182 - Review Request: R-biomaRt - R Interface to BioMart databases
https://bugzilla.redhat.com/show_bug.cgi?id=753182
[ 5 ] Bug #753185 - Review Request: R-Rcompression - R Package for in-memory compression
https://bugzilla.redhat.com/show_bug.cgi?id=753185
--------------------------------------------------------------------------------
This update can be installed with the "yum" update program. Use
su -c 'yum update R-timeDate' at the command line.
For more information, refer to "Managing Software with yum",
available at http://docs.fedoraproject.org/yum/.
All packages are signed with the Fedora Project GPG key. More details on the
GPG keys used by the Fedora Project can be found at
https://fedoraproject.org/keys
--------------------------------------------------------------------------------
12 years, 5 months
Fedora 16 Update: R-RM2-0.0-8.fc16
by updates@fedoraproject.org
--------------------------------------------------------------------------------
Fedora Update Notification
FEDORA-2011-15910
2011-11-15 23:36:23
--------------------------------------------------------------------------------
Name : R-RM2
Product : Fedora 16
Version : 0.0
Release : 8.fc16
URL : http://cran.r-project.org/web/packages/RM2/
Summary : Revenue Management and Pricing for R
Description :
RM2 is a simple package that implements functions
used in revenue management and pricing environments.
--------------------------------------------------------------------------------
Update Information:
Update R to 2.14.0. This required a mass rebuild of R components.
--------------------------------------------------------------------------------
ChangeLog:
* Wed Nov 9 2011 Tom Callaway <spot(a)fedoraproject.org> - 0.0-8
- rebuild for R 2.14.0
--------------------------------------------------------------------------------
References:
[ 1 ] Bug #751003 - New version of R 2.14.0 is available
https://bugzilla.redhat.com/show_bug.cgi?id=751003
[ 2 ] Bug #753188 - Review Request: R-rtracklayer - R interface to genome browsers and their annotation tracks
https://bugzilla.redhat.com/show_bug.cgi?id=753188
[ 3 ] Bug #753181 - Review Request: R-RCurl - General network (HTTP/FTP) client interface for R
https://bugzilla.redhat.com/show_bug.cgi?id=753181
[ 4 ] Bug #753182 - Review Request: R-biomaRt - R Interface to BioMart databases
https://bugzilla.redhat.com/show_bug.cgi?id=753182
[ 5 ] Bug #753185 - Review Request: R-Rcompression - R Package for in-memory compression
https://bugzilla.redhat.com/show_bug.cgi?id=753185
--------------------------------------------------------------------------------
This update can be installed with the "yum" update program. Use
su -c 'yum update R-RM2' at the command line.
For more information, refer to "Managing Software with yum",
available at http://docs.fedoraproject.org/yum/.
All packages are signed with the Fedora Project GPG key. More details on the
GPG keys used by the Fedora Project can be found at
https://fedoraproject.org/keys
--------------------------------------------------------------------------------
12 years, 5 months
Fedora 16 Update: R-GenomicFeatures-1.6.1-1.fc16
by updates@fedoraproject.org
--------------------------------------------------------------------------------
Fedora Update Notification
FEDORA-2011-15910
2011-11-15 23:36:23
--------------------------------------------------------------------------------
Name : R-GenomicFeatures
Product : Fedora 16
Version : 1.6.1
Release : 1.fc16
URL : http://bioconductor.org/packages/2.9/bioc/html/GenomicFeatures.html
Summary : Tools for making and manipulating transcript centric annotations
Description :
A set of tools and methods for making and manipulating transcript centric
annotations. With these tools the user can easily download the genomic
locations of the transcripts, exons and cds of a given organism, from either
the UCSC Genome Browser or a BioMart database (more sources will be supported
in the future). This information is then stored in a local database that
keeps track of the relationship between transcripts, exons, cds and genes.
Flexible methods are provided for extracting the desired features in a
convenient format.
--------------------------------------------------------------------------------
Update Information:
Update R to 2.14.0. This required a mass rebuild of R components.
--------------------------------------------------------------------------------
ChangeLog:
* Wed Nov 9 2011 Tom Callaway <spot(a)fedoraproject.org> - 1.6.1-1
- update to 1.6.1
--------------------------------------------------------------------------------
References:
[ 1 ] Bug #751003 - New version of R 2.14.0 is available
https://bugzilla.redhat.com/show_bug.cgi?id=751003
[ 2 ] Bug #753188 - Review Request: R-rtracklayer - R interface to genome browsers and their annotation tracks
https://bugzilla.redhat.com/show_bug.cgi?id=753188
[ 3 ] Bug #753181 - Review Request: R-RCurl - General network (HTTP/FTP) client interface for R
https://bugzilla.redhat.com/show_bug.cgi?id=753181
[ 4 ] Bug #753182 - Review Request: R-biomaRt - R Interface to BioMart databases
https://bugzilla.redhat.com/show_bug.cgi?id=753182
[ 5 ] Bug #753185 - Review Request: R-Rcompression - R Package for in-memory compression
https://bugzilla.redhat.com/show_bug.cgi?id=753185
--------------------------------------------------------------------------------
This update can be installed with the "yum" update program. Use
su -c 'yum update R-GenomicFeatures' at the command line.
For more information, refer to "Managing Software with yum",
available at http://docs.fedoraproject.org/yum/.
All packages are signed with the Fedora Project GPG key. More details on the
GPG keys used by the Fedora Project can be found at
https://fedoraproject.org/keys
--------------------------------------------------------------------------------
12 years, 5 months
Fedora 16 Update: R-rtracklayer-1.14.1-2.fc16
by updates@fedoraproject.org
--------------------------------------------------------------------------------
Fedora Update Notification
FEDORA-2011-15910
2011-11-15 23:36:23
--------------------------------------------------------------------------------
Name : R-rtracklayer
Product : Fedora 16
Version : 1.14.1
Release : 2.fc16
URL : http://www.bioconductor.org/packages/release/bioc/html/rtracklayer.html
Summary : R interface to genome browsers and their annotation tracks
Description :
Extensible framework for interacting with multiple genome browsers (currently
UCSC built-in) and manipulating annotation tracks in various formats
(currently GFF, BED, bedGraph, BED15, WIG, and BigWig built-in). The user may
export/import tracks to/from the supported browsers, as well as query and
modify the browser state, such as the current viewport.
--------------------------------------------------------------------------------
Update Information:
Update R to 2.14.0. This required a mass rebuild of R components.
--------------------------------------------------------------------------------
ChangeLog:
--------------------------------------------------------------------------------
References:
[ 1 ] Bug #751003 - New version of R 2.14.0 is available
https://bugzilla.redhat.com/show_bug.cgi?id=751003
[ 2 ] Bug #753188 - Review Request: R-rtracklayer - R interface to genome browsers and their annotation tracks
https://bugzilla.redhat.com/show_bug.cgi?id=753188
[ 3 ] Bug #753181 - Review Request: R-RCurl - General network (HTTP/FTP) client interface for R
https://bugzilla.redhat.com/show_bug.cgi?id=753181
[ 4 ] Bug #753182 - Review Request: R-biomaRt - R Interface to BioMart databases
https://bugzilla.redhat.com/show_bug.cgi?id=753182
[ 5 ] Bug #753185 - Review Request: R-Rcompression - R Package for in-memory compression
https://bugzilla.redhat.com/show_bug.cgi?id=753185
--------------------------------------------------------------------------------
This update can be installed with the "yum" update program. Use
su -c 'yum update R-rtracklayer' at the command line.
For more information, refer to "Managing Software with yum",
available at http://docs.fedoraproject.org/yum/.
All packages are signed with the Fedora Project GPG key. More details on the
GPG keys used by the Fedora Project can be found at
https://fedoraproject.org/keys
--------------------------------------------------------------------------------
12 years, 5 months