Fedora 16 Update: R-hgu95av2cdf-2.9.1-1.fc16
by updates@fedoraproject.org
--------------------------------------------------------------------------------
Fedora Update Notification
FEDORA-2011-15910
2011-11-15 23:36:23
--------------------------------------------------------------------------------
Name : R-hgu95av2cdf
Product : Fedora 16
Version : 2.9.1
Release : 1.fc16
URL : http://www.bioconductor.org/packages/2.9/data/annotation/html/hgu95av2cdf...
Summary : HG_U95Av2.CDF data file
Description :
Environment representing the HG_U95Av2.CDF file.
--------------------------------------------------------------------------------
Update Information:
Update R to 2.14.0. This required a mass rebuild of R components.
--------------------------------------------------------------------------------
ChangeLog:
* Wed Nov 9 2011 Tom Callaway <spot(a)fedoraproject.org> 2.9.1-1
- update to 2.9.1
--------------------------------------------------------------------------------
References:
[ 1 ] Bug #751003 - New version of R 2.14.0 is available
https://bugzilla.redhat.com/show_bug.cgi?id=751003
[ 2 ] Bug #753188 - Review Request: R-rtracklayer - R interface to genome browsers and their annotation tracks
https://bugzilla.redhat.com/show_bug.cgi?id=753188
[ 3 ] Bug #753181 - Review Request: R-RCurl - General network (HTTP/FTP) client interface for R
https://bugzilla.redhat.com/show_bug.cgi?id=753181
[ 4 ] Bug #753182 - Review Request: R-biomaRt - R Interface to BioMart databases
https://bugzilla.redhat.com/show_bug.cgi?id=753182
[ 5 ] Bug #753185 - Review Request: R-Rcompression - R Package for in-memory compression
https://bugzilla.redhat.com/show_bug.cgi?id=753185
--------------------------------------------------------------------------------
This update can be installed with the "yum" update program. Use
su -c 'yum update R-hgu95av2cdf' at the command line.
For more information, refer to "Managing Software with yum",
available at http://docs.fedoraproject.org/yum/.
All packages are signed with the Fedora Project GPG key. More details on the
GPG keys used by the Fedora Project can be found at
https://fedoraproject.org/keys
--------------------------------------------------------------------------------
12 years, 6 months
Fedora 16 Update: R-hgu95av2probe-2.9.0-1.fc16
by updates@fedoraproject.org
--------------------------------------------------------------------------------
Fedora Update Notification
FEDORA-2011-15910
2011-11-15 23:36:23
--------------------------------------------------------------------------------
Name : R-hgu95av2probe
Product : Fedora 16
Version : 2.9.0
Release : 1.fc16
URL : http://www.bioconductor.org/packages/release/data/annotation/html/hgu95av...
Summary : Probe sequence data for microarrays of type hgu95av2
Description :
This package was automatically created by package matchprobes version 1.9.2.
The probe sequence data was obtained from http://www.affymetrix.com.
The file name was HG\_U95Av2\_probe\_tab.
--------------------------------------------------------------------------------
Update Information:
Update R to 2.14.0. This required a mass rebuild of R components.
--------------------------------------------------------------------------------
ChangeLog:
* Wed Nov 9 2011 Tom Callaway <spot(a)fedoraproject.org> 2.9.0-1
- update to 2.9.0
--------------------------------------------------------------------------------
References:
[ 1 ] Bug #751003 - New version of R 2.14.0 is available
https://bugzilla.redhat.com/show_bug.cgi?id=751003
[ 2 ] Bug #753188 - Review Request: R-rtracklayer - R interface to genome browsers and their annotation tracks
https://bugzilla.redhat.com/show_bug.cgi?id=753188
[ 3 ] Bug #753181 - Review Request: R-RCurl - General network (HTTP/FTP) client interface for R
https://bugzilla.redhat.com/show_bug.cgi?id=753181
[ 4 ] Bug #753182 - Review Request: R-biomaRt - R Interface to BioMart databases
https://bugzilla.redhat.com/show_bug.cgi?id=753182
[ 5 ] Bug #753185 - Review Request: R-Rcompression - R Package for in-memory compression
https://bugzilla.redhat.com/show_bug.cgi?id=753185
--------------------------------------------------------------------------------
This update can be installed with the "yum" update program. Use
su -c 'yum update R-hgu95av2probe' at the command line.
For more information, refer to "Managing Software with yum",
available at http://docs.fedoraproject.org/yum/.
All packages are signed with the Fedora Project GPG key. More details on the
GPG keys used by the Fedora Project can be found at
https://fedoraproject.org/keys
--------------------------------------------------------------------------------
12 years, 6 months
Fedora 16 Update: R-BSgenome-1.22.0-1.fc16
by updates@fedoraproject.org
--------------------------------------------------------------------------------
Fedora Update Notification
FEDORA-2011-15910
2011-11-15 23:36:23
--------------------------------------------------------------------------------
Name : R-BSgenome
Product : Fedora 16
Version : 1.22.0
Release : 1.fc16
URL : http://bioconductor.org/packages/release/bioc/html/BSgenome.html
Summary : Infrastructure for Biostrings-based genome data packages
Description :
Infrastructure shared by all the Biostrings-based genome data packages
--------------------------------------------------------------------------------
Update Information:
Update R to 2.14.0. This required a mass rebuild of R components.
--------------------------------------------------------------------------------
ChangeLog:
* Wed Nov 9 2011 Tom Callaway <spot(a)fedoraproject.org> 1.22.0-1
- update to 1.22.0
--------------------------------------------------------------------------------
References:
[ 1 ] Bug #751003 - New version of R 2.14.0 is available
https://bugzilla.redhat.com/show_bug.cgi?id=751003
[ 2 ] Bug #753188 - Review Request: R-rtracklayer - R interface to genome browsers and their annotation tracks
https://bugzilla.redhat.com/show_bug.cgi?id=753188
[ 3 ] Bug #753181 - Review Request: R-RCurl - General network (HTTP/FTP) client interface for R
https://bugzilla.redhat.com/show_bug.cgi?id=753181
[ 4 ] Bug #753182 - Review Request: R-biomaRt - R Interface to BioMart databases
https://bugzilla.redhat.com/show_bug.cgi?id=753182
[ 5 ] Bug #753185 - Review Request: R-Rcompression - R Package for in-memory compression
https://bugzilla.redhat.com/show_bug.cgi?id=753185
--------------------------------------------------------------------------------
This update can be installed with the "yum" update program. Use
su -c 'yum update R-BSgenome' at the command line.
For more information, refer to "Managing Software with yum",
available at http://docs.fedoraproject.org/yum/.
All packages are signed with the Fedora Project GPG key. More details on the
GPG keys used by the Fedora Project can be found at
https://fedoraproject.org/keys
--------------------------------------------------------------------------------
12 years, 6 months
Fedora 16 Update: R-ROC-1.30.0-1.fc16
by updates@fedoraproject.org
--------------------------------------------------------------------------------
Fedora Update Notification
FEDORA-2011-15910
2011-11-15 23:36:23
--------------------------------------------------------------------------------
Name : R-ROC
Product : Fedora 16
Version : 1.30.0
Release : 1.fc16
URL : http://bioconductor.org/packages/release/bioc/html/ROC.html
Summary : Utilities for ROC
Description :
Utilities for ROC with uarray focus.
--------------------------------------------------------------------------------
Update Information:
Update R to 2.14.0. This required a mass rebuild of R components.
--------------------------------------------------------------------------------
ChangeLog:
* Wed Nov 9 2011 Tom Callaway <spot(a)fedoraproject.org> 1.30.0-1
- update to 1.30.0
--------------------------------------------------------------------------------
References:
[ 1 ] Bug #751003 - New version of R 2.14.0 is available
https://bugzilla.redhat.com/show_bug.cgi?id=751003
[ 2 ] Bug #753188 - Review Request: R-rtracklayer - R interface to genome browsers and their annotation tracks
https://bugzilla.redhat.com/show_bug.cgi?id=753188
[ 3 ] Bug #753181 - Review Request: R-RCurl - General network (HTTP/FTP) client interface for R
https://bugzilla.redhat.com/show_bug.cgi?id=753181
[ 4 ] Bug #753182 - Review Request: R-biomaRt - R Interface to BioMart databases
https://bugzilla.redhat.com/show_bug.cgi?id=753182
[ 5 ] Bug #753185 - Review Request: R-Rcompression - R Package for in-memory compression
https://bugzilla.redhat.com/show_bug.cgi?id=753185
--------------------------------------------------------------------------------
This update can be installed with the "yum" update program. Use
su -c 'yum update R-ROC' at the command line.
For more information, refer to "Managing Software with yum",
available at http://docs.fedoraproject.org/yum/.
All packages are signed with the Fedora Project GPG key. More details on the
GPG keys used by the Fedora Project can be found at
https://fedoraproject.org/keys
--------------------------------------------------------------------------------
12 years, 6 months
Fedora 16 Update: R-Rcompression-0.93.2-3.fc16
by updates@fedoraproject.org
--------------------------------------------------------------------------------
Fedora Update Notification
FEDORA-2011-15910
2011-11-15 23:36:23
--------------------------------------------------------------------------------
Name : R-Rcompression
Product : Fedora 16
Version : 0.93.2
Release : 3.fc16
URL : http://www.omegahat.org/Rcompression/
Summary : R Package for in-memory compression
Description :
This package is a basic R interface to the zlib and bzip2 facilities for
compressing and uncompressing data that are in memory rather than in files.
--------------------------------------------------------------------------------
Update Information:
Update R to 2.14.0. This required a mass rebuild of R components.
--------------------------------------------------------------------------------
ChangeLog:
--------------------------------------------------------------------------------
References:
[ 1 ] Bug #751003 - New version of R 2.14.0 is available
https://bugzilla.redhat.com/show_bug.cgi?id=751003
[ 2 ] Bug #753188 - Review Request: R-rtracklayer - R interface to genome browsers and their annotation tracks
https://bugzilla.redhat.com/show_bug.cgi?id=753188
[ 3 ] Bug #753181 - Review Request: R-RCurl - General network (HTTP/FTP) client interface for R
https://bugzilla.redhat.com/show_bug.cgi?id=753181
[ 4 ] Bug #753182 - Review Request: R-biomaRt - R Interface to BioMart databases
https://bugzilla.redhat.com/show_bug.cgi?id=753182
[ 5 ] Bug #753185 - Review Request: R-Rcompression - R Package for in-memory compression
https://bugzilla.redhat.com/show_bug.cgi?id=753185
--------------------------------------------------------------------------------
This update can be installed with the "yum" update program. Use
su -c 'yum update R-Rcompression' at the command line.
For more information, refer to "Managing Software with yum",
available at http://docs.fedoraproject.org/yum/.
All packages are signed with the Fedora Project GPG key. More details on the
GPG keys used by the Fedora Project can be found at
https://fedoraproject.org/keys
--------------------------------------------------------------------------------
12 years, 6 months
Fedora 16 Update: R-hgu133acdf-2.9.1-1.fc16
by updates@fedoraproject.org
--------------------------------------------------------------------------------
Fedora Update Notification
FEDORA-2011-15910
2011-11-15 23:36:23
--------------------------------------------------------------------------------
Name : R-hgu133acdf
Product : Fedora 16
Version : 2.9.1
Release : 1.fc16
URL : http://www.bioconductor.org/packages/2.9/data/annotation/html/hgu133acdf....
Summary : HG-U133A.cdf data file
Description :
Environment representing the HG-U133A.cdf file.
--------------------------------------------------------------------------------
Update Information:
Update R to 2.14.0. This required a mass rebuild of R components.
--------------------------------------------------------------------------------
ChangeLog:
* Wed Nov 9 2011 Tom Callaway <spot(a)fedoraproject.org> 2.9.1-1
- update to 2.9.1
--------------------------------------------------------------------------------
References:
[ 1 ] Bug #751003 - New version of R 2.14.0 is available
https://bugzilla.redhat.com/show_bug.cgi?id=751003
[ 2 ] Bug #753188 - Review Request: R-rtracklayer - R interface to genome browsers and their annotation tracks
https://bugzilla.redhat.com/show_bug.cgi?id=753188
[ 3 ] Bug #753181 - Review Request: R-RCurl - General network (HTTP/FTP) client interface for R
https://bugzilla.redhat.com/show_bug.cgi?id=753181
[ 4 ] Bug #753182 - Review Request: R-biomaRt - R Interface to BioMart databases
https://bugzilla.redhat.com/show_bug.cgi?id=753182
[ 5 ] Bug #753185 - Review Request: R-Rcompression - R Package for in-memory compression
https://bugzilla.redhat.com/show_bug.cgi?id=753185
--------------------------------------------------------------------------------
This update can be installed with the "yum" update program. Use
su -c 'yum update R-hgu133acdf' at the command line.
For more information, refer to "Managing Software with yum",
available at http://docs.fedoraproject.org/yum/.
All packages are signed with the Fedora Project GPG key. More details on the
GPG keys used by the Fedora Project can be found at
https://fedoraproject.org/keys
--------------------------------------------------------------------------------
12 years, 6 months
Fedora 16 Update: R-BSgenome.Celegans.UCSC.ce2-1.3.17-2.fc16
by updates@fedoraproject.org
--------------------------------------------------------------------------------
Fedora Update Notification
FEDORA-2011-15910
2011-11-15 23:36:23
--------------------------------------------------------------------------------
Name : R-BSgenome.Celegans.UCSC.ce2
Product : Fedora 16
Version : 1.3.17
Release : 2.fc16
URL : http://www.bioconductor.org/packages/release/data/annotation/html/BSgenom...
Summary : Caenorhabditis elegans genome (UCSC Release ce2)
Description :
Caenorhabditis elegans genome grabbed from UCSC (ce2, Mar. 2004)
and stored in Biostrings objects
--------------------------------------------------------------------------------
Update Information:
Update R to 2.14.0. This required a mass rebuild of R components.
--------------------------------------------------------------------------------
ChangeLog:
* Wed Nov 9 2011 Tom Callaway <spot(a)fedoraproject.org> 1.3.17-2
- rebuild for R 2.14.0
--------------------------------------------------------------------------------
References:
[ 1 ] Bug #751003 - New version of R 2.14.0 is available
https://bugzilla.redhat.com/show_bug.cgi?id=751003
[ 2 ] Bug #753188 - Review Request: R-rtracklayer - R interface to genome browsers and their annotation tracks
https://bugzilla.redhat.com/show_bug.cgi?id=753188
[ 3 ] Bug #753181 - Review Request: R-RCurl - General network (HTTP/FTP) client interface for R
https://bugzilla.redhat.com/show_bug.cgi?id=753181
[ 4 ] Bug #753182 - Review Request: R-biomaRt - R Interface to BioMart databases
https://bugzilla.redhat.com/show_bug.cgi?id=753182
[ 5 ] Bug #753185 - Review Request: R-Rcompression - R Package for in-memory compression
https://bugzilla.redhat.com/show_bug.cgi?id=753185
--------------------------------------------------------------------------------
This update can be installed with the "yum" update program. Use
su -c 'yum update R-BSgenome.Celegans.UCSC.ce2' at the command line.
For more information, refer to "Managing Software with yum",
available at http://docs.fedoraproject.org/yum/.
All packages are signed with the Fedora Project GPG key. More details on the
GPG keys used by the Fedora Project can be found at
https://fedoraproject.org/keys
--------------------------------------------------------------------------------
12 years, 6 months
Fedora 16 Update: R-biomaRt-2.10.0-1.fc16
by updates@fedoraproject.org
--------------------------------------------------------------------------------
Fedora Update Notification
FEDORA-2011-15910
2011-11-15 23:36:23
--------------------------------------------------------------------------------
Name : R-biomaRt
Product : Fedora 16
Version : 2.10.0
Release : 1.fc16
URL : http://www.bioconductor.org/packages/release/bioc/html/biomaRt.html
Summary : R Interface to BioMart databases
Description :
In recent years a wealth of biological data has become available in public
data repositories. Easy access to these valuable data resources and firm
integration with data analysis is needed for comprehensive bioinformatics data
analysis. biomaRt provides an interface to a growing collection of databases
implementing the BioMart software suite (http://www.biomart.org). The package
enables retrieval of large amounts of data in a uniform way without the need
to know the underlying database schemas or write complex SQL queries. Examples
of BioMart databases are Ensembl, COSMIC, Uniprot, HGNC, Gramene, Wormbase and
dbSNP mapped to Ensembl. These major databases give biomaRt users direct
access to a diverse set of data and enable a wide range of powerful online
queries from gene annotation to database mining.
--------------------------------------------------------------------------------
Update Information:
Update R to 2.14.0. This required a mass rebuild of R components.
--------------------------------------------------------------------------------
ChangeLog:
--------------------------------------------------------------------------------
References:
[ 1 ] Bug #751003 - New version of R 2.14.0 is available
https://bugzilla.redhat.com/show_bug.cgi?id=751003
[ 2 ] Bug #753188 - Review Request: R-rtracklayer - R interface to genome browsers and their annotation tracks
https://bugzilla.redhat.com/show_bug.cgi?id=753188
[ 3 ] Bug #753181 - Review Request: R-RCurl - General network (HTTP/FTP) client interface for R
https://bugzilla.redhat.com/show_bug.cgi?id=753181
[ 4 ] Bug #753182 - Review Request: R-biomaRt - R Interface to BioMart databases
https://bugzilla.redhat.com/show_bug.cgi?id=753182
[ 5 ] Bug #753185 - Review Request: R-Rcompression - R Package for in-memory compression
https://bugzilla.redhat.com/show_bug.cgi?id=753185
--------------------------------------------------------------------------------
This update can be installed with the "yum" update program. Use
su -c 'yum update R-biomaRt' at the command line.
For more information, refer to "Managing Software with yum",
available at http://docs.fedoraproject.org/yum/.
All packages are signed with the Fedora Project GPG key. More details on the
GPG keys used by the Fedora Project can be found at
https://fedoraproject.org/keys
--------------------------------------------------------------------------------
12 years, 6 months
Fedora 16 Update: R-affydata-1.11.15-2.fc16
by updates@fedoraproject.org
--------------------------------------------------------------------------------
Fedora Update Notification
FEDORA-2011-15910
2011-11-15 23:36:23
--------------------------------------------------------------------------------
Name : R-affydata
Product : Fedora 16
Version : 1.11.15
Release : 2.fc16
URL : http://www.bioconductor.org/packages/2.6/data/experiment/html/affydata.html
Summary : Affymetrix data for demonstration purpose
Description :
Example data sets of a slightly large size. They represent 'real world
examples', unlike the artificial examples included in the package affy.
--------------------------------------------------------------------------------
Update Information:
Update R to 2.14.0. This required a mass rebuild of R components.
--------------------------------------------------------------------------------
ChangeLog:
* Tue Nov 8 2011 Tom Callaway <spot(a)fedoraproject.org> 1.11.15-2
- rebuild for R 2.14.0
* Thu Nov 3 2011 pingou <pingou(a)pingoured.fr> 1.11.15-1
- Update to version 1.11.15
--------------------------------------------------------------------------------
References:
[ 1 ] Bug #751003 - New version of R 2.14.0 is available
https://bugzilla.redhat.com/show_bug.cgi?id=751003
[ 2 ] Bug #753188 - Review Request: R-rtracklayer - R interface to genome browsers and their annotation tracks
https://bugzilla.redhat.com/show_bug.cgi?id=753188
[ 3 ] Bug #753181 - Review Request: R-RCurl - General network (HTTP/FTP) client interface for R
https://bugzilla.redhat.com/show_bug.cgi?id=753181
[ 4 ] Bug #753182 - Review Request: R-biomaRt - R Interface to BioMart databases
https://bugzilla.redhat.com/show_bug.cgi?id=753182
[ 5 ] Bug #753185 - Review Request: R-Rcompression - R Package for in-memory compression
https://bugzilla.redhat.com/show_bug.cgi?id=753185
--------------------------------------------------------------------------------
This update can be installed with the "yum" update program. Use
su -c 'yum update R-affydata' at the command line.
For more information, refer to "Managing Software with yum",
available at http://docs.fedoraproject.org/yum/.
All packages are signed with the Fedora Project GPG key. More details on the
GPG keys used by the Fedora Project can be found at
https://fedoraproject.org/keys
--------------------------------------------------------------------------------
12 years, 6 months
Fedora 16 Update: R-RCurl-1.7.0-2.fc16
by updates@fedoraproject.org
--------------------------------------------------------------------------------
Fedora Update Notification
FEDORA-2011-15910
2011-11-15 23:36:23
--------------------------------------------------------------------------------
Name : R-RCurl
Product : Fedora 16
Version : 1.7.0
Release : 2.fc16
URL : http://cran.r-project.org/web/packages/RCurl/index.html
Summary : General network (HTTP/FTP) client interface for R
Description :
The package allows one to compose general HTTP requests and provides convenient
functions to fetch URIs, get & post forms, etc. and process the results
returned by the Web server. This provides a great deal of control over the
HTTP/FTP/... connection and the form of the request while providing a
higher-level interface than is available just using R socket connections.
Additionally, the underlying implementation is robust and extensive, supporting
FTP/FTPS/TFTP (uploads and downloads), SSL/HTTPS, telnet, dict, ldap, and also
supports cookies, redirects, authentication, etc.
--------------------------------------------------------------------------------
Update Information:
Update R to 2.14.0. This required a mass rebuild of R components.
--------------------------------------------------------------------------------
ChangeLog:
--------------------------------------------------------------------------------
References:
[ 1 ] Bug #751003 - New version of R 2.14.0 is available
https://bugzilla.redhat.com/show_bug.cgi?id=751003
[ 2 ] Bug #753188 - Review Request: R-rtracklayer - R interface to genome browsers and their annotation tracks
https://bugzilla.redhat.com/show_bug.cgi?id=753188
[ 3 ] Bug #753181 - Review Request: R-RCurl - General network (HTTP/FTP) client interface for R
https://bugzilla.redhat.com/show_bug.cgi?id=753181
[ 4 ] Bug #753182 - Review Request: R-biomaRt - R Interface to BioMart databases
https://bugzilla.redhat.com/show_bug.cgi?id=753182
[ 5 ] Bug #753185 - Review Request: R-Rcompression - R Package for in-memory compression
https://bugzilla.redhat.com/show_bug.cgi?id=753185
--------------------------------------------------------------------------------
This update can be installed with the "yum" update program. Use
su -c 'yum update R-RCurl' at the command line.
For more information, refer to "Managing Software with yum",
available at http://docs.fedoraproject.org/yum/.
All packages are signed with the Fedora Project GPG key. More details on the
GPG keys used by the Fedora Project can be found at
https://fedoraproject.org/keys
--------------------------------------------------------------------------------
12 years, 6 months