9:42 a.m.
--------------------------------------------------------------------------------
Fedora Update Notification
FEDORA-2018-050da4f07f
2018-05-31 14:34:44.120573
--------------------------------------------------------------------------------
Name : R-qtl
Product : Fedora 28
Version : 1.42.8
Release : 1.fc28
URL : http://www.rqtl.org/
Summary : Tools for analyzing QTL experiments
Description :
R-qtl is an extensible, interactive environment for mapping
quantitative trait loci (QTLs) in experimental crosses. Our goal is to
make complex QTL mapping methods widely accessible and allow users to
focus on modeling rather than computing.
A key component of computational methods for QTL mapping is the hidden
Markov model (HMM) technology for dealing with missing genotype
data. We have implemented the main HMM algorithms, with allowance for
the presence of genotyping errors, for backcrosses, intercrosses, and
phase-known four-way crosses.
The current version of R-qtl includes facilities for estimating
genetic maps, identifying genotyping errors, and performing single-QTL
genome scans and two-QTL, two-dimensional genome scans, by interval
mapping (with the EM algorithm), Haley-Knott regression, and multiple
imputation. All of this may be done in the presence of covariates
(such as sex, age or treatment). One may also fit higher-order QTL
models by multiple imputation and Haley-Knott regression.
--------------------------------------------------------------------------------
Update Information:
Update R to 3.5.0. Rebuild rpy and rkward to match. rpy updated to 2.9.3 in
Fedora 28. All compiled R packages rebuilt (except for R-shogun, because shogun
doesn't build right now). Most updated to the latest version.
--------------------------------------------------------------------------------
ChangeLog:
* Thu May 17 2018 Tom Callaway <spot(a)fedoraproject.org> - 1.42.8-1
- update to 1.42-8
--------------------------------------------------------------------------------
References:
[ 1 ] Bug #1567573 - rpy-2.9.3 is available
https://bugzilla.redhat.com/show_bug.cgi?id=1567573
[ 2 ] Bug #1570804 - R-3.5.0 is available
https://bugzilla.redhat.com/show_bug.cgi?id=1570804
[ 3 ] Bug #1555530 - R-affyio: FTBFS in F28
https://bugzilla.redhat.com/show_bug.cgi?id=1555530
[ 4 ] Bug #1555528 - R-affy: FTBFS in F28
https://bugzilla.redhat.com/show_bug.cgi?id=1555528
[ 5 ] Bug #1555498 - R-Biostrings: FTBFS in F28
https://bugzilla.redhat.com/show_bug.cgi?id=1555498
[ 6 ] Bug #1555532 - R-bitops: FTBFS in F28
https://bugzilla.redhat.com/show_bug.cgi?id=1555532
[ 7 ] Bug #1555533 - R-caTools: FTBFS in F28
https://bugzilla.redhat.com/show_bug.cgi?id=1555533
[ 8 ] Bug #1560254 - R-curl-3.2 is available
https://bugzilla.redhat.com/show_bug.cgi?id=1560254
[ 9 ] Bug #1575172 - R-httpuv-1.4.3 is available
https://bugzilla.redhat.com/show_bug.cgi?id=1575172
[ 10 ] Bug #1563656 - R-lmtest-0.9-36 is available
https://bugzilla.redhat.com/show_bug.cgi?id=1563656
[ 11 ] Bug #1555547 - R-maanova: FTBFS in F28
https://bugzilla.redhat.com/show_bug.cgi?id=1555547
[ 12 ] Bug #1555552 - R-msm: FTBFS in F28
https://bugzilla.redhat.com/show_bug.cgi?id=1555552
[ 13 ] Bug #1555555 - R-multtest: FTBFS in F28
https://bugzilla.redhat.com/show_bug.cgi?id=1555555
[ 14 ] Bug #1555556 - R-mvtnorm: FTBFS in F28
https://bugzilla.redhat.com/show_bug.cgi?id=1555556
[ 15 ] Bug #1555561 - R-preprocessCore: FTBFS in F28
https://bugzilla.redhat.com/show_bug.cgi?id=1555561
[ 16 ] Bug #1555564 - R-rlecuyer: FTBFS in F28
https://bugzilla.redhat.com/show_bug.cgi?id=1555564
[ 17 ] Bug #1555515 - R-ROC: FTBFS in F28
https://bugzilla.redhat.com/show_bug.cgi?id=1555515
[ 18 ] Bug #1555516 - R-RODBC: FTBFS in F28
https://bugzilla.redhat.com/show_bug.cgi?id=1555516
[ 19 ] Bug #1555521 - R-Rsolid: FTBFS in F28
https://bugzilla.redhat.com/show_bug.cgi?id=1555521
[ 20 ] Bug #1555569 - R-statmod: FTBFS in F28
https://bugzilla.redhat.com/show_bug.cgi?id=1555569
[ 21 ] Bug #1574116 - R-stringi-1.2.2 is available
https://bugzilla.redhat.com/show_bug.cgi?id=1574116
[ 22 ] Bug #1555574 - R-waveslim: FTBFS in F28
https://bugzilla.redhat.com/show_bug.cgi?id=1555574
[ 23 ] Bug #1555575 - R-wavethresh: FTBFS in F28
https://bugzilla.redhat.com/show_bug.cgi?id=1555575
[ 24 ] Bug #1555525 - R-XML: FTBFS in F28
https://bugzilla.redhat.com/show_bug.cgi?id=1555525
[ 25 ] Bug #1405667 - R-zoo-1.8-1 is available
https://bugzilla.redhat.com/show_bug.cgi?id=1405667
[ 26 ] Bug #1578961 - Review Request: R-prettyunits - Pretty, Human Readable Formatting
of Quantities
https://bugzilla.redhat.com/show_bug.cgi?id=1578961
[ 27 ] Bug #1578963 - Review Request: R-blob - A Simple S3 Class for Representing
Vectors of Binary Data ('BLOBS')
https://bugzilla.redhat.com/show_bug.cgi?id=1578963
[ 28 ] Bug #1556527 - v8-314: FTBFS in F28
https://bugzilla.redhat.com/show_bug.cgi?id=1556527
--------------------------------------------------------------------------------
This update can be installed with the "dnf" update program. Use
su -c 'dnf upgrade --advisory FEDORA-2018-050da4f07f' at the command
line. For more information, refer to the dnf documentation available at
http://dnf.readthedocs.io/en/latest/command_ref.html#upgrade-command-label
All packages are signed with the Fedora Project GPG key. More details on the
GPG keys used by the Fedora Project can be found at
https://fedoraproject.org/keys
--------------------------------------------------------------------------------