Fedora 31 Update: openms-2.6.0-2.fc31
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Fedora Update Notification
FEDORA-2020-ef40d045f2
2020-11-03 01:20:46.180235
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Name : openms
Product : Fedora 31
Version : 2.6.0
Release : 2.fc31
URL : http://www.openms.de/
Summary : LC/MS data management and analyses
Description :
OpenMS is a C++ library for LC-MS data management and analyses.
It offers an infrastructure for the rapid development of mass spectrometry
related software. OpenMS is free software available under the three clause BSD
license and runs under Windows, MacOSX and Linux.
It comes with a vast variety of pre-built and ready-to-use tools for proteomics
and metabolomics data analysis (TOPPTools) and
powerful 2D and 3D visualization(TOPPView).
OpenMS offers analyses for various quantitation protocols,
including label-free quantitation, SILAC, iTRAQ, SRM, SWATH, etc.
It provides built-in algorithms for de-novo identification and database search,
as well as adapters to other state-of-the art tools like XTandem, Mascot,
OMSSA, etc.
It supports easy integration of OpenMS built tools into workflow engines like
Knime, Galaxy, WS-Pgrade, and TOPPAS via the TOPPtools concept and
a unified parameter handling via a 'common tool description' (CTD) scheme.
The OpenMS Proteomics Pipeline is a pipeline for
the analysis of HPLC-MS data.
It consists of several small applications that
can be chained to create analysis pipelines tailored
for a specific problem.
The TOPP tools are divided into several subgroups:
- Graphical Tools
- File Handling
- Signal Processing and Preprocessing
- Quantitation
- Map Alignment
- Protein/Peptide Identification
- Protein/Peptide Processing
- Targeted Experiments
- Peptide Property Prediction
- Misc
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Update Information:
- Avoid skipping rpaths
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ChangeLog:
* Sun Oct 25 2020 Antonio Trande <sagitter(a)fedoraproject.org> - 2.6.0-2
- Avoid skipping rpaths
* Fri Oct 2 2020 Antonio Trande <sagitter(a)fedoraproject.org> - 2.6.0-1
- Release 2.6.0
* Sat Aug 1 2020 Fedora Release Engineering <releng(a)fedoraproject.org> - 2.5.0-7
- Second attempt - Rebuilt for https://fedoraproject.org/wiki/Fedora_33_Mass_Rebuild
- Enable cmake_in_source_build
* Tue Jul 28 2020 Fedora Release Engineering <releng(a)fedoraproject.org> - 2.5.0-6
- Rebuilt for https://fedoraproject.org/wiki/Fedora_33_Mass_Rebuild
* Thu Jun 25 2020 Orion Poplawski <orion(a)cora.nwra.com> - 2.5.0-5
- Rebuild for hdf5 1.10.6
* Tue Jun 2 2020 Antonio Trande <sagitter(a)fedoraproject.org> - 2.5.0-4
- Rebuild for boost-1.73
* Fri May 1 2020 Antonio Trande <sagitter(a)fedoraproject.org> - 2.5.0-3
- Rebuild for coin-or-* updates
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References:
[ 1 ] Bug #1891329 - libOpenMS.so is not in search path, but needed
https://bugzilla.redhat.com/show_bug.cgi?id=1891329
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This update can be installed with the "dnf" update program. Use
su -c 'dnf upgrade --advisory FEDORA-2020-ef40d045f2' at the command
line. For more information, refer to the dnf documentation available at
http://dnf.readthedocs.io/en/latest/command_ref.html#upgrade-command-label
All packages are signed with the Fedora Project GPG key. More details on the
GPG keys used by the Fedora Project can be found at
https://fedoraproject.org/keys
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