rpms/perl-Catalyst-Plugin-ConfigLoader/F-8 perl-Catalyst-Plugin-ConfigLoader.spec, 1.3, 1.4 sources, 1.3, 1.4
by Chris Weyl
Author: cweyl
Update of /cvs/extras/rpms/perl-Catalyst-Plugin-ConfigLoader/F-8
In directory cvs1.fedora.phx.redhat.com:/tmp/cvs-serv5839
Modified Files:
perl-Catalyst-Plugin-ConfigLoader.spec sources
Log Message:
* Thu Sep 25 2008 Chris Weyl <cweyl(a)alumni.drew.edu> 0.21-1
- update to 0.21
Index: perl-Catalyst-Plugin-ConfigLoader.spec
===================================================================
RCS file: /cvs/extras/rpms/perl-Catalyst-Plugin-ConfigLoader/F-8/perl-Catalyst-Plugin-ConfigLoader.spec,v
retrieving revision 1.3
retrieving revision 1.4
diff -u -r1.3 -r1.4
--- perl-Catalyst-Plugin-ConfigLoader.spec 26 Jun 2008 02:51:22 -0000 1.3
+++ perl-Catalyst-Plugin-ConfigLoader.spec 26 Sep 2008 05:11:43 -0000 1.4
@@ -1,5 +1,5 @@
Name: perl-Catalyst-Plugin-ConfigLoader
-Version: 0.20
+Version: 0.21
Release: 1%{?dist}
Summary: Load config files of various types
License: GPL+ or Artistic
@@ -59,6 +59,9 @@
%{_mandir}/man3/*
%changelog
+* Thu Sep 25 2008 Chris Weyl <cweyl(a)alumni.drew.edu> 0.21-1
+- update to 0.21
+
* Sat May 10 2008 Chris Weyl <cweyl(a)alumni.drew.edu> 0.20-1
- update to 0.20
Index: sources
===================================================================
RCS file: /cvs/extras/rpms/perl-Catalyst-Plugin-ConfigLoader/F-8/sources,v
retrieving revision 1.3
retrieving revision 1.4
diff -u -r1.3 -r1.4
--- sources 26 Jun 2008 02:51:22 -0000 1.3
+++ sources 26 Sep 2008 05:11:43 -0000 1.4
@@ -1 +1 @@
-caf54295dc488e1e5c246ece24bfe0cd Catalyst-Plugin-ConfigLoader-0.20.tar.gz
+64f68d04c8ae102a1e424324e02f1fb0 Catalyst-Plugin-ConfigLoader-0.21.tar.gz
15 years, 7 months
rpms/perl-Catalyst-Plugin-ConfigLoader/F-9 perl-Catalyst-Plugin-ConfigLoader.spec, 1.4, 1.5 sources, 1.3, 1.4
by Chris Weyl
Author: cweyl
Update of /cvs/extras/rpms/perl-Catalyst-Plugin-ConfigLoader/F-9
In directory cvs1.fedora.phx.redhat.com:/tmp/cvs-serv5712
Modified Files:
perl-Catalyst-Plugin-ConfigLoader.spec sources
Log Message:
* Thu Sep 25 2008 Chris Weyl <cweyl(a)alumni.drew.edu> 0.21-1
- update to 0.21
Index: perl-Catalyst-Plugin-ConfigLoader.spec
===================================================================
RCS file: /cvs/extras/rpms/perl-Catalyst-Plugin-ConfigLoader/F-9/perl-Catalyst-Plugin-ConfigLoader.spec,v
retrieving revision 1.4
retrieving revision 1.5
diff -u -r1.4 -r1.5
--- perl-Catalyst-Plugin-ConfigLoader.spec 10 May 2008 19:25:06 -0000 1.4
+++ perl-Catalyst-Plugin-ConfigLoader.spec 26 Sep 2008 05:11:14 -0000 1.5
@@ -1,5 +1,5 @@
Name: perl-Catalyst-Plugin-ConfigLoader
-Version: 0.20
+Version: 0.21
Release: 1%{?dist}
Summary: Load config files of various types
License: GPL+ or Artistic
@@ -59,6 +59,9 @@
%{_mandir}/man3/*
%changelog
+* Thu Sep 25 2008 Chris Weyl <cweyl(a)alumni.drew.edu> 0.21-1
+- update to 0.21
+
* Sat May 10 2008 Chris Weyl <cweyl(a)alumni.drew.edu> 0.20-1
- update to 0.20
Index: sources
===================================================================
RCS file: /cvs/extras/rpms/perl-Catalyst-Plugin-ConfigLoader/F-9/sources,v
retrieving revision 1.3
retrieving revision 1.4
diff -u -r1.3 -r1.4
--- sources 10 May 2008 19:25:06 -0000 1.3
+++ sources 26 Sep 2008 05:11:14 -0000 1.4
@@ -1 +1 @@
-caf54295dc488e1e5c246ece24bfe0cd Catalyst-Plugin-ConfigLoader-0.20.tar.gz
+64f68d04c8ae102a1e424324e02f1fb0 Catalyst-Plugin-ConfigLoader-0.21.tar.gz
15 years, 7 months
rpms/perl-Catalyst-Plugin-ConfigLoader/devel .cvsignore, 1.3, 1.4 perl-Catalyst-Plugin-ConfigLoader.spec, 1.4, 1.5 sources, 1.3, 1.4
by Chris Weyl
Author: cweyl
Update of /cvs/extras/rpms/perl-Catalyst-Plugin-ConfigLoader/devel
In directory cvs1.fedora.phx.redhat.com:/tmp/cvs-serv5501
Modified Files:
.cvsignore perl-Catalyst-Plugin-ConfigLoader.spec sources
Log Message:
* Thu Sep 25 2008 Chris Weyl <cweyl(a)alumni.drew.edu> 0.21-1
- update to 0.21
Index: .cvsignore
===================================================================
RCS file: /cvs/extras/rpms/perl-Catalyst-Plugin-ConfigLoader/devel/.cvsignore,v
retrieving revision 1.3
retrieving revision 1.4
diff -u -r1.3 -r1.4
--- .cvsignore 10 May 2008 17:40:35 -0000 1.3
+++ .cvsignore 26 Sep 2008 05:10:01 -0000 1.4
@@ -1 +1 @@
-Catalyst-Plugin-ConfigLoader-0.20.tar.gz
+Catalyst-Plugin-ConfigLoader-0.21.tar.gz
Index: perl-Catalyst-Plugin-ConfigLoader.spec
===================================================================
RCS file: /cvs/extras/rpms/perl-Catalyst-Plugin-ConfigLoader/devel/perl-Catalyst-Plugin-ConfigLoader.spec,v
retrieving revision 1.4
retrieving revision 1.5
diff -u -r1.4 -r1.5
--- perl-Catalyst-Plugin-ConfigLoader.spec 10 May 2008 17:40:36 -0000 1.4
+++ perl-Catalyst-Plugin-ConfigLoader.spec 26 Sep 2008 05:10:01 -0000 1.5
@@ -1,5 +1,5 @@
Name: perl-Catalyst-Plugin-ConfigLoader
-Version: 0.20
+Version: 0.21
Release: 1%{?dist}
Summary: Load config files of various types
License: GPL+ or Artistic
@@ -59,6 +59,9 @@
%{_mandir}/man3/*
%changelog
+* Thu Sep 25 2008 Chris Weyl <cweyl(a)alumni.drew.edu> 0.21-1
+- update to 0.21
+
* Sat May 10 2008 Chris Weyl <cweyl(a)alumni.drew.edu> 0.20-1
- update to 0.20
Index: sources
===================================================================
RCS file: /cvs/extras/rpms/perl-Catalyst-Plugin-ConfigLoader/devel/sources,v
retrieving revision 1.3
retrieving revision 1.4
diff -u -r1.3 -r1.4
--- sources 10 May 2008 17:40:36 -0000 1.3
+++ sources 26 Sep 2008 05:10:01 -0000 1.4
@@ -1 +1 @@
-caf54295dc488e1e5c246ece24bfe0cd Catalyst-Plugin-ConfigLoader-0.20.tar.gz
+64f68d04c8ae102a1e424324e02f1fb0 Catalyst-Plugin-ConfigLoader-0.21.tar.gz
15 years, 7 months
rpms/perl-Catalyst-Plugin-Authentication/F-8 perl-Catalyst-Plugin-Authentication.spec, 1.1, 1.2 sources, 1.2, 1.3
by Chris Weyl
Author: cweyl
Update of /cvs/extras/rpms/perl-Catalyst-Plugin-Authentication/F-8
In directory cvs1.fedora.phx.redhat.com:/tmp/cvs-serv4185
Modified Files:
perl-Catalyst-Plugin-Authentication.spec sources
Log Message:
* Thu Sep 25 2008 Chris Weyl <cweyl(a)alumni.drew.edu> 0.10007-1
- update to 0.10007
Index: perl-Catalyst-Plugin-Authentication.spec
===================================================================
RCS file: /cvs/extras/rpms/perl-Catalyst-Plugin-Authentication/F-8/perl-Catalyst-Plugin-Authentication.spec,v
retrieving revision 1.1
retrieving revision 1.2
diff -u -r1.1 -r1.2
--- perl-Catalyst-Plugin-Authentication.spec 17 Jun 2008 20:26:26 -0000 1.1
+++ perl-Catalyst-Plugin-Authentication.spec 26 Sep 2008 05:01:37 -0000 1.2
@@ -1,6 +1,6 @@
Name: perl-Catalyst-Plugin-Authentication
-Version: 0.10006
-Release: 4%{?dist}
+Version: 0.10007
+Release: 1%{?dist}
Summary: Infrastructure plugin for the Catalyst authentication framework
License: GPL+ or Artistic
Group: Development/Libraries
@@ -83,6 +83,9 @@
%{_mandir}/man3/*
%changelog
+* Thu Sep 25 2008 Chris Weyl <cweyl(a)alumni.drew.edu> 0.10007-1
+- update to 0.10007
+
* Tue Jun 17 2008 Chris Weyl <cweyl(a)alumni.drew.edu> 0.10006-4
- bump
Index: sources
===================================================================
RCS file: /cvs/extras/rpms/perl-Catalyst-Plugin-Authentication/F-8/sources,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -r1.2 -r1.3
--- sources 17 Jun 2008 20:26:26 -0000 1.2
+++ sources 26 Sep 2008 05:01:37 -0000 1.3
@@ -1 +1 @@
-dbc176a55ba2b7ef2bfd0980f1772c50 Catalyst-Plugin-Authentication-0.10006.tar.gz
+538032bb9f77ebe072143371198c07ee Catalyst-Plugin-Authentication-0.10007.tar.gz
15 years, 7 months
rpms/perl-Catalyst-Plugin-Authentication/F-9 perl-Catalyst-Plugin-Authentication.spec, 1.1, 1.2 sources, 1.2, 1.3
by Chris Weyl
Author: cweyl
Update of /cvs/extras/rpms/perl-Catalyst-Plugin-Authentication/F-9
In directory cvs1.fedora.phx.redhat.com:/tmp/cvs-serv3686
Modified Files:
perl-Catalyst-Plugin-Authentication.spec sources
Log Message:
* Thu Sep 25 2008 Chris Weyl <cweyl(a)alumni.drew.edu> 0.10007-1
- update to 0.10007
Index: perl-Catalyst-Plugin-Authentication.spec
===================================================================
RCS file: /cvs/extras/rpms/perl-Catalyst-Plugin-Authentication/F-9/perl-Catalyst-Plugin-Authentication.spec,v
retrieving revision 1.1
retrieving revision 1.2
diff -u -r1.1 -r1.2
--- perl-Catalyst-Plugin-Authentication.spec 17 Jun 2008 17:51:20 -0000 1.1
+++ perl-Catalyst-Plugin-Authentication.spec 26 Sep 2008 04:57:38 -0000 1.2
@@ -1,6 +1,6 @@
Name: perl-Catalyst-Plugin-Authentication
-Version: 0.10006
-Release: 4%{?dist}
+Version: 0.10007
+Release: 1%{?dist}
Summary: Infrastructure plugin for the Catalyst authentication framework
License: GPL+ or Artistic
Group: Development/Libraries
@@ -83,6 +83,9 @@
%{_mandir}/man3/*
%changelog
+* Thu Sep 25 2008 Chris Weyl <cweyl(a)alumni.drew.edu> 0.10007-1
+- update to 0.10007
+
* Tue Jun 17 2008 Chris Weyl <cweyl(a)alumni.drew.edu> 0.10006-4
- bump
Index: sources
===================================================================
RCS file: /cvs/extras/rpms/perl-Catalyst-Plugin-Authentication/F-9/sources,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -r1.2 -r1.3
--- sources 17 Jun 2008 17:51:20 -0000 1.2
+++ sources 26 Sep 2008 04:57:38 -0000 1.3
@@ -1 +1 @@
-dbc176a55ba2b7ef2bfd0980f1772c50 Catalyst-Plugin-Authentication-0.10006.tar.gz
+538032bb9f77ebe072143371198c07ee Catalyst-Plugin-Authentication-0.10007.tar.gz
15 years, 7 months
rpms/perl-Catalyst-Plugin-Authentication/devel .cvsignore, 1.2, 1.3 perl-Catalyst-Plugin-Authentication.spec, 1.2, 1.3 sources, 1.2, 1.3
by Chris Weyl
Author: cweyl
Update of /cvs/extras/rpms/perl-Catalyst-Plugin-Authentication/devel
In directory cvs1.fedora.phx.redhat.com:/tmp/cvs-serv3429
Modified Files:
.cvsignore perl-Catalyst-Plugin-Authentication.spec sources
Log Message:
* Thu Sep 25 2008 Chris Weyl <cweyl(a)alumni.drew.edu> 0.10007-1
- update to 0.10007
Index: .cvsignore
===================================================================
RCS file: /cvs/extras/rpms/perl-Catalyst-Plugin-Authentication/devel/.cvsignore,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -r1.2 -r1.3
--- .cvsignore 17 Jun 2008 17:49:36 -0000 1.2
+++ .cvsignore 26 Sep 2008 04:56:34 -0000 1.3
@@ -1 +1 @@
-Catalyst-Plugin-Authentication-0.10006.tar.gz
+Catalyst-Plugin-Authentication-0.10007.tar.gz
Index: perl-Catalyst-Plugin-Authentication.spec
===================================================================
RCS file: /cvs/extras/rpms/perl-Catalyst-Plugin-Authentication/devel/perl-Catalyst-Plugin-Authentication.spec,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -r1.2 -r1.3
--- perl-Catalyst-Plugin-Authentication.spec 17 Jun 2008 17:50:29 -0000 1.2
+++ perl-Catalyst-Plugin-Authentication.spec 26 Sep 2008 04:56:34 -0000 1.3
@@ -1,6 +1,6 @@
Name: perl-Catalyst-Plugin-Authentication
-Version: 0.10006
-Release: 4%{?dist}
+Version: 0.10007
+Release: 1%{?dist}
Summary: Infrastructure plugin for the Catalyst authentication framework
License: GPL+ or Artistic
Group: Development/Libraries
@@ -83,6 +83,9 @@
%{_mandir}/man3/*
%changelog
+* Thu Sep 25 2008 Chris Weyl <cweyl(a)alumni.drew.edu> 0.10007-1
+- update to 0.10007
+
* Tue Jun 17 2008 Chris Weyl <cweyl(a)alumni.drew.edu> 0.10006-4
- bump
Index: sources
===================================================================
RCS file: /cvs/extras/rpms/perl-Catalyst-Plugin-Authentication/devel/sources,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -r1.2 -r1.3
--- sources 17 Jun 2008 17:49:36 -0000 1.2
+++ sources 26 Sep 2008 04:56:34 -0000 1.3
@@ -1 +1 @@
-dbc176a55ba2b7ef2bfd0980f1772c50 Catalyst-Plugin-Authentication-0.10006.tar.gz
+538032bb9f77ebe072143371198c07ee Catalyst-Plugin-Authentication-0.10007.tar.gz
15 years, 7 months
rpms/perl-bioperl/devel bioperl-1.5.2_102-paths.patch, 1.1, 1.2 perl-bioperl.spec, 1.13, 1.14
by alexlan
Author: alexlan
Update of /cvs/extras/rpms/perl-bioperl/devel
In directory cvs1.fedora.phx.redhat.com:/tmp/cvs-serv13363
Modified Files:
bioperl-1.5.2_102-paths.patch perl-bioperl.spec
Log Message:
* Thu Sep 25 2008 Alex Lancaster <alexlan[AT]fedoraproject org> - 1.5.2_102-13
- Fix patch fuzz
bioperl-1.5.2_102-paths.patch:
Index: bioperl-1.5.2_102-paths.patch
===================================================================
RCS file: /cvs/extras/rpms/perl-bioperl/devel/bioperl-1.5.2_102-paths.patch,v
retrieving revision 1.1
retrieving revision 1.2
diff -u -r1.1 -r1.2
--- bioperl-1.5.2_102-paths.patch 5 Apr 2007 11:02:34 -0000 1.1
+++ bioperl-1.5.2_102-paths.patch 25 Sep 2008 09:17:06 -0000 1.2
@@ -1,6 +1,19 @@
-diff -u bioperl-1.5.2_102.orig/Build.PL bioperl-1.5.2_102/Build.PL
---- bioperl-1.5.2_102.orig/Build.PL 2007-03-14 03:46:30.000000000 -0700
-+++ bioperl-1.5.2_102/Build.PL 2007-03-14 03:46:40.000000000 -0700
+diff -u -r bioperl-1.5.2_102/Bio/Variation/IO.pm bioperl-1.5.2_102.mod/Bio/Variation/IO.pm
+--- bioperl-1.5.2_102/Bio/Variation/IO.pm 2007-02-14 04:37:48.000000000 -0700
++++ bioperl-1.5.2_102.mod/Bio/Variation/IO.pm 2008-09-25 02:03:26.000000000 -0700
+@@ -86,7 +86,7 @@
+
+ This makes the simplest ever reformatter
+
+- #!/usr/local/bin/perl
++ #!/usr/bin/perl
+
+ $format1 = shift;
+ $format2 = shift;
+Only in bioperl-1.5.2_102.mod/Bio/Variation: IO.pm.orig
+diff -u -r bioperl-1.5.2_102/Build.PL bioperl-1.5.2_102.mod/Build.PL
+--- bioperl-1.5.2_102/Build.PL 2007-02-14 04:37:47.000000000 -0700
++++ bioperl-1.5.2_102.mod/Build.PL 2008-09-25 02:03:26.000000000 -0700
@@ -31,8 +31,8 @@
build_requires => {
'Test::More' => 0,
@@ -21,21 +34,9 @@
'XML::SAX::Writer' => '0/writing xml/Bio::SeqIO::tigrxml',
'XML::Twig' => '0/parsing xml/Bio::Variation::IO::xml,Bio::DB::Taxonomy::entrez,Bio::DB::Biblio::eutils,Bio::Graph::IO::psi_xml',
'XML::Writer' => '0.4/parsing and writing xml/Bio::SeqIO::agave,Bio::SeqIO::game::gameWriter,Bio::SeqIO::chadoxml,Bio::SeqIO::tinyseq,Bio::Variation::IO::xml,Bio::SearchIO::Writer::BSMLResultWriter'
-diff -ru bioperl-1.5.2_102.orig/Bio/Variation/IO.pm bioperl-1.5.2_102/Bio/Variation/IO.pm
---- bioperl-1.5.2_102.orig/Bio/Variation/IO.pm 2003-06-04 04:36:44.000000000 -0400
-+++ bioperl-1.5.2_102/Bio/Variation/IO.pm 2005-03-21 20:21:54.000000000 -0500
-@@ -83,7 +83,7 @@
-
- This makes the simplest ever reformatter
-
-- #!/usr/local/bin/perl
-+ #!/usr/bin/perl
-
- $format1 = shift;
- $format2 = shift || die "Usage: reformat format1 format2 < input > output";
-diff -ru bioperl-1.5.2_102.orig/examples/align/align_on_codons.pl bioperl-1.5.2_102/examples/align/align_on_codons.pl
---- bioperl-1.5.2_102.orig/examples/align/align_on_codons.pl 2003-07-07 14:20:58.000000000 -0400
-+++ bioperl-1.5.2_102/examples/align/align_on_codons.pl 2005-03-21 20:24:44.000000000 -0500
+diff -u -r bioperl-1.5.2_102/examples/align/align_on_codons.pl bioperl-1.5.2_102.mod/examples/align/align_on_codons.pl
+--- bioperl-1.5.2_102/examples/align/align_on_codons.pl 2007-02-14 04:37:47.000000000 -0700
++++ bioperl-1.5.2_102.mod/examples/align/align_on_codons.pl 2008-09-25 02:03:26.000000000 -0700
@@ -13,10 +13,10 @@
BEGIN {
$CODONSIZE = 3; # parametrize everything like a good little programmer
@@ -49,99 +50,99 @@
}
$USAGE =
qq{align_on_codons.pl < file.fa
-diff -ru bioperl-1.5.2_102.orig/examples/db/dbfetch bioperl-1.5.2_102/examples/db/dbfetch
---- bioperl-1.5.2_102.orig/examples/db/dbfetch 2003-07-15 12:12:16.000000000 -0400
-+++ bioperl-1.5.2_102/examples/db/dbfetch 2005-03-21 20:25:01.000000000 -0500
+diff -u -r bioperl-1.5.2_102/examples/db/dbfetch bioperl-1.5.2_102.mod/examples/db/dbfetch
+--- bioperl-1.5.2_102/examples/db/dbfetch 2007-02-14 04:37:48.000000000 -0700
++++ bioperl-1.5.2_102.mod/examples/db/dbfetch 2008-09-25 02:03:26.000000000 -0700
@@ -1,4 +1,4 @@
-#!/usr/local/bin/perl -- # -*-Perl-*-
+#!/usr/bin/perl -- # -*-Perl-*-
=head1 NAME
-diff -ru bioperl-1.5.2_102.orig/examples/db/getGenBank.pl bioperl-1.5.2_102/examples/db/getGenBank.pl
---- bioperl-1.5.2_102.orig/examples/db/getGenBank.pl 2003-07-07 14:20:59.000000000 -0400
-+++ bioperl-1.5.2_102/examples/db/getGenBank.pl 2005-03-21 20:24:57.000000000 -0500
+diff -u -r bioperl-1.5.2_102/examples/db/getGenBank.pl bioperl-1.5.2_102.mod/examples/db/getGenBank.pl
+--- bioperl-1.5.2_102/examples/db/getGenBank.pl 2007-02-14 04:37:47.000000000 -0700
++++ bioperl-1.5.2_102.mod/examples/db/getGenBank.pl 2008-09-25 02:03:26.000000000 -0700
@@ -1,4 +1,4 @@
-#!/usr/local/bin/perl -w
+#!/usr/bin/perl -w
#
# How to retrieve GenBank entries over the Web
#
-diff -ru bioperl-1.5.2_102.orig/examples/db/get_seqs.pl bioperl-1.5.2_102/examples/db/get_seqs.pl
---- bioperl-1.5.2_102.orig/examples/db/get_seqs.pl 2003-07-07 14:20:59.000000000 -0400
-+++ bioperl-1.5.2_102/examples/db/get_seqs.pl 2005-03-21 20:24:53.000000000 -0500
+diff -u -r bioperl-1.5.2_102/examples/db/get_seqs.pl bioperl-1.5.2_102.mod/examples/db/get_seqs.pl
+--- bioperl-1.5.2_102/examples/db/get_seqs.pl 2007-02-14 04:37:48.000000000 -0700
++++ bioperl-1.5.2_102.mod/examples/db/get_seqs.pl 2008-09-25 02:03:26.000000000 -0700
@@ -1,4 +1,4 @@
-#!/usr/local/bin/perl -w
+#!/usr/bin/perl -w
use strict;
use vars qw($USAGE);
use Carp;
-diff -ru bioperl-1.5.2_102.orig/examples/generate_random_seq.pl bioperl-1.5.2_102/examples/generate_random_seq.pl
---- bioperl-1.5.2_102.orig/examples/generate_random_seq.pl 2004-11-01 16:09:08.000000000 -0500
-+++ bioperl-1.5.2_102/examples/generate_random_seq.pl 2005-03-21 20:27:23.000000000 -0500
+diff -u -r bioperl-1.5.2_102/examples/generate_random_seq.pl bioperl-1.5.2_102.mod/examples/generate_random_seq.pl
+--- bioperl-1.5.2_102/examples/generate_random_seq.pl 2007-02-14 04:37:47.000000000 -0700
++++ bioperl-1.5.2_102.mod/examples/generate_random_seq.pl 2008-09-25 02:03:26.000000000 -0700
@@ -1,4 +1,4 @@
-#!/bin/perl -w
+#!/usr/bin/perl -w
use strict;
use vars qw($USAGE);
-diff -ru bioperl-1.5.2_102.orig/examples/searchio/psiblast_features.pl bioperl-1.5.2_102/examples/searchio/psiblast_features.pl
---- bioperl-1.5.2_102.orig/examples/searchio/psiblast_features.pl 2004-02-21 05:50:34.000000000 -0500
-+++ bioperl-1.5.2_102/examples/searchio/psiblast_features.pl 2005-03-21 20:24:30.000000000 -0500
+diff -u -r bioperl-1.5.2_102/examples/searchio/psiblast_features.pl bioperl-1.5.2_102.mod/examples/searchio/psiblast_features.pl
+--- bioperl-1.5.2_102/examples/searchio/psiblast_features.pl 2007-02-14 04:37:48.000000000 -0700
++++ bioperl-1.5.2_102.mod/examples/searchio/psiblast_features.pl 2008-09-25 02:03:26.000000000 -0700
@@ -1,4 +1,4 @@
-#!/usr/local/bin/perl
+#!/usr/bin/perl
# Example usage of a SearchIO::psiblast parser of traditional format Blast
# and PSI-Blast reports.
-diff -ru bioperl-1.5.2_102.orig/examples/structure/structure-io.pl bioperl-1.5.2_102/examples/structure/structure-io.pl
---- bioperl-1.5.2_102.orig/examples/structure/structure-io.pl 2004-11-01 16:09:33.000000000 -0500
-+++ bioperl-1.5.2_102/examples/structure/structure-io.pl 2005-03-21 20:27:17.000000000 -0500
+diff -u -r bioperl-1.5.2_102/examples/structure/structure-io.pl bioperl-1.5.2_102.mod/examples/structure/structure-io.pl
+--- bioperl-1.5.2_102/examples/structure/structure-io.pl 2007-02-14 04:37:48.000000000 -0700
++++ bioperl-1.5.2_102.mod/examples/structure/structure-io.pl 2008-09-25 02:03:26.000000000 -0700
@@ -1,4 +1,4 @@
-#!/bin/perl -w
+#!/usr/bin/perl -w
# Getting Entry, Chain, Residue, and Atom objects given a PDB file
use Bio::Structure::IO;
-diff -ru bioperl-1.5.2_102.orig/examples/tk/hitdisplay.pl bioperl-1.5.2_102/examples/tk/hitdisplay.pl
---- bioperl-1.5.2_102.orig/examples/tk/hitdisplay.pl 2003-07-07 14:20:59.000000000 -0400
-+++ bioperl-1.5.2_102/examples/tk/hitdisplay.pl 2005-03-21 20:24:26.000000000 -0500
+diff -u -r bioperl-1.5.2_102/examples/tk/hitdisplay.pl bioperl-1.5.2_102.mod/examples/tk/hitdisplay.pl
+--- bioperl-1.5.2_102/examples/tk/hitdisplay.pl 2007-02-14 04:37:47.000000000 -0700
++++ bioperl-1.5.2_102.mod/examples/tk/hitdisplay.pl 2008-09-25 02:03:26.000000000 -0700
@@ -1,4 +1,4 @@
-#!/usr/local/bin/perl -w
+#!/usr/bin/perl -w
#
# PROGRAM : hitdisplay.pl
# PURPOSE : Demonstrate Bio::Tk::HitDisplay
-diff -ru bioperl-1.5.2_102.orig/examples/tools/gb_to_gff.pl bioperl-1.5.2_102/examples/tools/gb_to_gff.pl
---- bioperl-1.5.2_102.orig/examples/tools/gb_to_gff.pl 2003-07-07 14:20:59.000000000 -0400
-+++ bioperl-1.5.2_102/examples/tools/gb_to_gff.pl 2005-03-21 20:24:21.000000000 -0500
+diff -u -r bioperl-1.5.2_102/examples/tools/gb_to_gff.pl bioperl-1.5.2_102.mod/examples/tools/gb_to_gff.pl
+--- bioperl-1.5.2_102/examples/tools/gb_to_gff.pl 2007-02-14 04:37:47.000000000 -0700
++++ bioperl-1.5.2_102.mod/examples/tools/gb_to_gff.pl 2008-09-25 02:03:26.000000000 -0700
@@ -1,4 +1,4 @@
-#!/usr/local/bin/perl -w
+#!/usr/bin/perl -w
use strict;
use Bio::Tools::GFF;
-diff -ru bioperl-1.5.2_102.orig/examples/tools/gff2ps.pl bioperl-1.5.2_102/examples/tools/gff2ps.pl
---- bioperl-1.5.2_102.orig/examples/tools/gff2ps.pl 2003-07-07 14:20:59.000000000 -0400
-+++ bioperl-1.5.2_102/examples/tools/gff2ps.pl 2005-03-21 20:24:17.000000000 -0500
+diff -u -r bioperl-1.5.2_102/examples/tools/gff2ps.pl bioperl-1.5.2_102.mod/examples/tools/gff2ps.pl
+--- bioperl-1.5.2_102/examples/tools/gff2ps.pl 2007-02-14 04:37:47.000000000 -0700
++++ bioperl-1.5.2_102.mod/examples/tools/gff2ps.pl 2008-09-25 02:03:26.000000000 -0700
@@ -1,4 +1,4 @@
-#!/usr/local/bin/perl
+#!/usr/bin/perl
=head1 NAME
-diff -ru bioperl-1.5.2_102.orig/t/Promoterwise.t bioperl-1.5.2_102/t/Promoterwise.t
---- bioperl-1.5.2_102.orig/t/Promoterwise.t 2003-03-10 13:21:03.000000000 -0500
-+++ bioperl-1.5.2_102/t/Promoterwise.t 2005-03-21 20:24:04.000000000 -0500
+diff -u -r bioperl-1.5.2_102/t/Promoterwise.t bioperl-1.5.2_102.mod/t/Promoterwise.t
+--- bioperl-1.5.2_102/t/Promoterwise.t 2007-02-14 04:37:47.000000000 -0700
++++ bioperl-1.5.2_102.mod/t/Promoterwise.t 2008-09-25 02:03:26.000000000 -0700
@@ -1,4 +1,4 @@
-#!/usr/local/bin/perl
+#!/usr/bin/perl
# -*-Perl-*-
## Bioperl Test Harness Script for Modules
-diff -ru bioperl-1.5.2_102.orig/t/testformats.pl bioperl-1.5.2_102/t/testformats.pl
---- bioperl-1.5.2_102.orig/t/testformats.pl 2001-06-29 17:17:02.000000000 -0400
-+++ bioperl-1.5.2_102/t/testformats.pl 2005-03-21 20:24:00.000000000 -0500
+diff -u -r bioperl-1.5.2_102/t/testformats.pl bioperl-1.5.2_102.mod/t/testformats.pl
+--- bioperl-1.5.2_102/t/testformats.pl 2007-02-14 04:37:47.000000000 -0700
++++ bioperl-1.5.2_102.mod/t/testformats.pl 2008-09-25 02:03:26.000000000 -0700
@@ -1,4 +1,4 @@
-#!/usr/local/bin/perl -w
+#!/usr/bin/perl -w
Index: perl-bioperl.spec
===================================================================
RCS file: /cvs/extras/rpms/perl-bioperl/devel/perl-bioperl.spec,v
retrieving revision 1.13
retrieving revision 1.14
diff -u -r1.13 -r1.14
--- perl-bioperl.spec 5 Mar 2008 12:32:54 -0000 1.13
+++ perl-bioperl.spec 25 Sep 2008 09:17:06 -0000 1.14
@@ -1,6 +1,6 @@
Name: perl-bioperl
Version: 1.5.2_102
-Release: 12%{?dist}
+Release: 13%{?dist}
Summary: Perl tools for computational molecular biology
Group: Development/Libraries
@@ -117,6 +117,9 @@
%{_mandir}/man3/*.3*
%changelog
+* Thu Sep 25 2008 Alex Lancaster <alexlan[AT]fedoraproject org> - 1.5.2_102-13
+- Fix patch fuzz
+
* Wed Mar 5 2008 Tom "spot" Callaway <tcallawa(a)redhat.com> 1.5.2_102-12
- bootstrapping done, building normally
15 years, 7 months
[Bug 462440] New: Please upgrade to 0.31
by Red Hat Bugzilla
Please do not reply directly to this email. All additional
comments should be made in the comments box of this bug.
Summary: Please upgrade to 0.31
https://bugzilla.redhat.com/show_bug.cgi?id=462440
Summary: Please upgrade to 0.31
Product: Fedora
Version: rawhide
Platform: All
OS/Version: Linux
Status: NEW
Severity: medium
Priority: medium
Component: perl-Test-Expect
AssignedTo: cweyl(a)alumni.drew.edu
ReportedBy: rc040203(a)freenet.de
QAContact: extras-qa(a)fedoraproject.org
CC: fedora-perl-devel-list(a)redhat.com
Estimated Hours: 0.0
Classification: Fedora
Description of problem:
The perl(Test::Expect) in Fedora doesn't suffice rt-3.8.x's testsuite's
demands.
rt-3.8.x needs Test::Expect >= 0.31
Additional info:
I am going to upgrade the package.
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15 years, 7 months
[Bug 461285] New: Any use of Class::MethodMaker spews pages of warnings to console
by Red Hat Bugzilla
Please do not reply directly to this email. All additional
comments should be made in the comments box of this bug.
Summary: Any use of Class::MethodMaker spews pages of warnings to console
https://bugzilla.redhat.com/show_bug.cgi?id=461285
Summary: Any use of Class::MethodMaker spews pages of warnings
to console
Product: Fedora
Version: 9
Platform: All
OS/Version: Linux
Status: NEW
Severity: medium
Priority: medium
Component: perl-Class-MethodMaker
AssignedTo: dgregor(a)redhat.com
ReportedBy: berrange(a)redhat.com
QAContact: extras-qa(a)fedoraproject.org
CC: fedora-perl-devel-list(a)redhat.com
Estimated Hours: 0.0
Classification: Fedora
Description of problem:
Since the upgrade to perl 5.10, any application which uses Class::MethodMaker
spews pages of warnings to stderr. This makes such apps essentially unusable if
they're console based
See this demo:
# cat > cmm.pl <<EOF
package Foo;
use Class::MethodMaker
new_with_init => "new",
get_set => [qw(bar)];
sub init {
my $self = shift;
$self->bar("hello");
}
package main;
my $foo = Foo->new;
print $foo->bar, "\n";
$foo->bar("world");
print $foo->bar, "\n";
EOF
Version-Release number of selected component (if applicable):
perl-5.10.0-31.fc9.i386
perl-Class-MethodMaker-2.11-1.fc9.i386
How reproducible:
Always
Steps to Reproduce:
1. perl cmm.pl
2.
3.
Actual results:
Name " Foo::bar" used only once: possible typo at
/usr/lib/perl5/vendor_perl/5.10.0/i386-linux-thread-multi/Class/MethodMaker/Engine.pm
line 781.
Name " Foo::get_bar" used only once: possible typo at
/usr/lib/perl5/vendor_perl/5.10.0/i386-linux-thread-multi/Class/MethodMaker/Engine.pm
line 781.
Name " Foo::new" used only once: possible typo at
/usr/lib/perl5/vendor_perl/5.10.0/i386-linux-thread-multi/Class/MethodMaker/Engine.pm
line 781.
Name " Foo::bar_reset" used only once: possible typo at
/usr/lib/perl5/vendor_perl/5.10.0/i386-linux-thread-multi/Class/MethodMaker/Engine.pm
line 781.
Name " Foo::bar_isset" used only once: possible typo at
/usr/lib/perl5/vendor_perl/5.10.0/i386-linux-thread-multi/Class/MethodMaker/Engine.pm
line 781.
Name " Foo::set_bar" used only once: possible typo at
/usr/lib/perl5/vendor_perl/5.10.0/i386-linux-thread-multi/Class/MethodMaker/Engine.pm
line 781.
Name " Foo::clear_bar" used only once: possible typo at
/usr/lib/perl5/vendor_perl/5.10.0/i386-linux-thread-multi/Class/MethodMaker/Engine.pm
line 781.
hello
world
Expected results:
hello
world
Additional info:
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15 years, 7 months
[Bug 461581] New: perl-Catalyst-Runtime-scripts should depend on perl-parent
by Red Hat Bugzilla
Please do not reply directly to this email. All additional
comments should be made in the comments box of this bug.
Summary: perl-Catalyst-Runtime-scripts should depend on perl-parent
https://bugzilla.redhat.com/show_bug.cgi?id=461581
Summary: perl-Catalyst-Runtime-scripts should depend on
perl-parent
Product: Fedora
Version: 9
Platform: All
OS/Version: Linux
Status: NEW
Severity: low
Priority: medium
Component: perl-Catalyst-Runtime
AssignedTo: cweyl(a)alumni.drew.edu
ReportedBy: allane(a)cybaea.com
QAContact: extras-qa(a)fedoraproject.org
CC: fedora-perl-devel-list(a)redhat.com
Estimated Hours: 0.0
Classification: Fedora
Description of problem:
The perl-Catalyst-Runtime-scripts RPM package (and presumably
perl-Catalyst-Devel ?) should depend on perl-parent
Version-Release number of selected component (if applicable): 5.7014-3.fc9.
How reproducible: Always.
Steps to Reproduce:
1. yum install perl-Catalyst-Runtime-scripts.noarch
2. catalyst.pl MyApp
3. cd MyApp
4. perl script/myapp_server.pl
Actual results:
Can't locate parent.pm in @INC (@INC contains: [...snip...]) at
/home/allane/playpen/MyApp/script/../lib/MyApp.pm line 16.
BEGIN failed--compilation aborted at
/home/allane/playpen/MyApp/script/../lib/MyApp.pm line 16.
Compilation failed in require at script/myapp_server.pl line 55.
Expected results:
[debug] Debug messages enabled
[debug] Statistics enabled
[debug] Loaded plugins:
[...snip...]
Additional info:
Do
yum install perl-parent
to fix, but it would be nicer if the RPM package had the right dependency.
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15 years, 7 months