Re: python 3.5 openmp issue

[Robert Kuska]

----- Original Message -----
>  From: "Orion Poplawski" <orion(a)cora.nwra.com&gt;
>  To: "Fedora Python SIG" <python-devel(a)lists.fedoraproject.org&gt;,
> "Robert Kuska" <rkuska(a)redhat.com&gt;, "Matej Stuchlik"
>  <mstuchli(a)redhat.com&gt;, "Development discussions related to Fedora"
> <devel(a)lists.fedoraproject.org&gt;
>  Sent: Tuesday, November 10, 2015 10:43:21 PM
>  Subject: python 3.5 openmp issue
>  
>  h5py build is failing with python 3.5:
>  
>  creating
>  build/temp.linux-x86_64-3.5/builddir/build/BUILD/python3-h5py-2.5.0-5.fc24/h5py
>  gcc -pthread -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -g -pipe -Wall
>  -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions
>  -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches
>  -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic
>  -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Werror=format-security
>  -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong
>  --param=ssp-buffer-size=4 -grecord-gcc-switches
>  -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -fopenmp
>  -fPIC -DH5_USE_16_API -I/builddir/build/BUILD/python3-h5py-2.5.0-5.fc24/lzf
>  -I/opt/local/include -I/usr/local/include
>  -I/usr/lib64/python3.5/site-packages/numpy/core/include
>  -I/usr/include/python3.5m -c
>  /builddir/build/BUILD/python3-h5py-2.5.0-5.fc24/h5py/defs.c -o
>  build/temp.linux-x86_64-3.5/builddir/build/BUILD/python3-h5py-2.5.0-5.fc24/h5py/defs.o
>  In file included from /usr/include/python3.5m/pyatomic.h:12:0,
>                   from /usr/include/python3.5m/Python.h:53,
>                   from
>  /builddir/build/BUILD/python3-h5py-2.5.0-5.fc24/h5py/defs.c:36:
>  /usr/lib/gcc/x86_64-redhat-linux/5.2.1/include/stdatomic.h:40:1: sorry,
>  unimplemented: '_Atomic' with OpenMP
>   typedef _Atomic _Bool atomic_bool;
>   ^
>  /usr/lib/gcc/x86_64-redhat-linux/5.2.1/include/stdatomic.h:41:1: sorry,
>  unimplemented: '_Atomic' with OpenMP
>   typedef _Atomic char atomic_char;
>   ^
>  
>  This appears to be https://bugs.python.org/issue25150 for which there appears
>  to be a patch.  Could this be applied please?
>  
>  Thanks. 
Here you go
http://koji.fedoraproject.org/koji/buildinfo?buildID=698435

>  
>  --
>  Orion Poplawski
>  Technical Manager                     303-415-9701 x222
>  NWRA, Boulder/CoRA Office             FAX: [phone]
>  3380 Mitchell Lane                       orion(a)nwra.com
>  Boulder, CO 80301                   http://www.nwra.com
>   
Regards,

Robert Kuska
{rkuska}