[R-biomaRt/f15] initial commit

[Tom Callaway]

commit 8f270919b1c6dba91845c038dd4bf9fe18efa106
Author: Tom "spot" Callaway <tcallawa at redhat.com>
Date:   Mon Nov 14 16:05:31 2011 -0500

    initial commit

 R-biomaRt.spec |   58 ++++++++++++++++++++++++++++++++++++++++++++++++++++++++
 sources        |    1 +
 2 files changed, 59 insertions(+), 0 deletions(-)
---
diff --git a/R-biomaRt.spec b/R-biomaRt.spec
new file mode 100644
index 0000000..8fbad17
--- /dev/null
+++ b/R-biomaRt.spec
@@ -0,0 +1,58 @@
+%global packname  biomaRt
+
+Name:             R-%{packname}
+Version:          2.10.0
+Release:          1%{?dist}
+Summary:          R Interface to BioMart databases
+Group:            Applications/Productivity
+License:          Artistic 2.0
+URL:              http://www.bioconductor.org/packages/release/bioc/html/biomaRt.html
+Source0:          http://www.bioconductor.org/packages/2.9/bioc/src/contrib/%{packname}_%{version}.tar.gz
+Requires:         R-core >= 2.7.0, texlive-latex, R-XML, R-RCurl
+BuildRequires:    R-devel >= 2.7.0, R-XML, R-RCurl
+BuildArch:        noarch
+
+%description
+In recent years a wealth of biological data has become available in public 
+data repositories. Easy access to these valuable data resources and firm 
+integration with data analysis is needed for comprehensive bioinformatics data 
+analysis. biomaRt provides an interface to a growing collection of databases 
+implementing the BioMart software suite (http://www.biomart.org). The package 
+enables retrieval of large amounts of data in a uniform way without the need 
+to know the underlying database schemas or write complex SQL queries. Examples 
+of BioMart databases are Ensembl, COSMIC, Uniprot, HGNC, Gramene, Wormbase and 
+dbSNP mapped to Ensembl. These major databases give biomaRt users direct 
+access to a diverse set of data and enable a wide range of powerful online 
+queries from gene annotation to database mining.
+
+%prep
+%setup -c -q -n %{packname}
+
+%build
+
+%install
+mkdir -p %{buildroot}%{_datadir}/R/library
+%{_bindir}/R CMD INSTALL %{packname} -l %{buildroot}%{_datadir}/R/library
+# Clean up in advance of check
+test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so)
+rm -rf %{buildroot}%{_datadir}/R/library/R.css
+
+%check
+# Enable if R-annotate ever arrives in Fedora.
+# %%{_bindir}/R CMD check %%{packname}
+
+%files
+%dir %{_datadir}/R/library/%{packname}/
+%doc %{_datadir}/R/library/%{packname}/doc/
+%doc %{_datadir}/R/library/%{packname}/html/
+%doc %{_datadir}/R/library/%{packname}/DESCRIPTION
+%{_datadir}/R/library/%{packname}/NAMESPACE
+%{_datadir}/R/library/%{packname}/INDEX
+%{_datadir}/R/library/%{packname}/Meta/
+%{_datadir}/R/library/%{packname}/R/
+%{_datadir}/R/library/%{packname}/help/
+%{_datadir}/R/library/%{packname}/scripts/
+
+%changelog
+* Fri Nov 11 2011 Tom "spot" Callaway <tcallawa at redhat.com> 2.10.0-1
+- initial package for Fedora
diff --git a/sources b/sources
index e69de29..a0e93d8 100644
--- a/sources
+++ b/sources
@@ -0,0 +1 @@
+a2d53e989f1aee40668b3acbc0b7a188  biomaRt_2.10.0.tar.gz