[R-biomaRt/f16] initial commit
Tom Callaway
spot at fedoraproject.org
Mon Nov 14 21:05:40 UTC 2011
commit 4efc418ce924e349e1a8990e7b55ae932677e41b
Author: Tom "spot" Callaway <tcallawa at redhat.com>
Date: Mon Nov 14 16:05:37 2011 -0500
initial commit
R-biomaRt.spec | 58 ++++++++++++++++++++++++++++++++++++++++++++++++++++++++
sources | 1 +
2 files changed, 59 insertions(+), 0 deletions(-)
---
diff --git a/R-biomaRt.spec b/R-biomaRt.spec
new file mode 100644
index 0000000..8fbad17
--- /dev/null
+++ b/R-biomaRt.spec
@@ -0,0 +1,58 @@
+%global packname biomaRt
+
+Name: R-%{packname}
+Version: 2.10.0
+Release: 1%{?dist}
+Summary: R Interface to BioMart databases
+Group: Applications/Productivity
+License: Artistic 2.0
+URL: http://www.bioconductor.org/packages/release/bioc/html/biomaRt.html
+Source0: http://www.bioconductor.org/packages/2.9/bioc/src/contrib/%{packname}_%{version}.tar.gz
+Requires: R-core >= 2.7.0, texlive-latex, R-XML, R-RCurl
+BuildRequires: R-devel >= 2.7.0, R-XML, R-RCurl
+BuildArch: noarch
+
+%description
+In recent years a wealth of biological data has become available in public
+data repositories. Easy access to these valuable data resources and firm
+integration with data analysis is needed for comprehensive bioinformatics data
+analysis. biomaRt provides an interface to a growing collection of databases
+implementing the BioMart software suite (http://www.biomart.org). The package
+enables retrieval of large amounts of data in a uniform way without the need
+to know the underlying database schemas or write complex SQL queries. Examples
+of BioMart databases are Ensembl, COSMIC, Uniprot, HGNC, Gramene, Wormbase and
+dbSNP mapped to Ensembl. These major databases give biomaRt users direct
+access to a diverse set of data and enable a wide range of powerful online
+queries from gene annotation to database mining.
+
+%prep
+%setup -c -q -n %{packname}
+
+%build
+
+%install
+mkdir -p %{buildroot}%{_datadir}/R/library
+%{_bindir}/R CMD INSTALL %{packname} -l %{buildroot}%{_datadir}/R/library
+# Clean up in advance of check
+test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so)
+rm -rf %{buildroot}%{_datadir}/R/library/R.css
+
+%check
+# Enable if R-annotate ever arrives in Fedora.
+# %%{_bindir}/R CMD check %%{packname}
+
+%files
+%dir %{_datadir}/R/library/%{packname}/
+%doc %{_datadir}/R/library/%{packname}/doc/
+%doc %{_datadir}/R/library/%{packname}/html/
+%doc %{_datadir}/R/library/%{packname}/DESCRIPTION
+%{_datadir}/R/library/%{packname}/NAMESPACE
+%{_datadir}/R/library/%{packname}/INDEX
+%{_datadir}/R/library/%{packname}/Meta/
+%{_datadir}/R/library/%{packname}/R/
+%{_datadir}/R/library/%{packname}/help/
+%{_datadir}/R/library/%{packname}/scripts/
+
+%changelog
+* Fri Nov 11 2011 Tom "spot" Callaway <tcallawa at redhat.com> 2.10.0-1
+- initial package for Fedora
diff --git a/sources b/sources
index e69de29..a0e93d8 100644
--- a/sources
+++ b/sources
@@ -0,0 +1 @@
+a2d53e989f1aee40668b3acbc0b7a188 biomaRt_2.10.0.tar.gz
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