R 2.10.0 updates

[Tom Callaway]

Sorry that this one didn't make it in time to be tagged for Fedora 12,
but it will be available as a 0day update.

Fedora 10:
https://admin.fedoraproject.org/updates/rpy-1.0.3-13.fc10,R-2.10.0-1.fc10

Fedora 11:
https://admin.fedoraproject.org/updates/rpy-2.0.6-7.fc11,R-2.10.0-1.fc11

Fedora 12:
https://admin.fedoraproject.org/updates/rpy-2.0.6-7.fc12,R-2.10.0-1.fc12

EL-4: https://admin.fedoraproject.org/updates/R-2.10.0-1.el4

EL-5: https://admin.fedoraproject.org/updates/R-2.10.0-1.el5

Remember that EL-4 and EL-5 updates for R have to sit in updates-testing
for 3 weeks, unless they receive 3 "positive" karma votes. If you use
these packages and you want them to hit the updates repository sooner,
please test them and give feedback at the above links.

Thanks,

~spot

[Tom Callaway]

On 11/06/2009 05:42 AM, Tom "spot" Callaway wrote:
>  Sorry that this one didn't make it in time to be tagged for
> Fedora 12,
>  but it will be available as a 0day update. 
Brown-paper bag fix available to resolve scriptlet noise. With 2.10.0,
we no longer need to generate search index.txt from the modules
"CONTENTS" files.

We can also stop using the macro for the %post/%postun scriptlets in all
R module packages, but for now, the script checks the version of R and
only runs the index.txt generation bits if R < 2.10.0 (basically, a noop
for everything we care about).

We probably need to coordinate a rebuild of all R modules as part of
this, so it might not be a bad time to drop the %_R_make_search_index
scriptlet macro everywhere.

Here's the links to the new update:

Fedora 10:
https://admin.fedoraproject.org/updates/R-2.10.0-2.fc10

Fedora 11:
https://admin.fedoraproject.org/updates/R-2.10.0-2.fc11

Fedora 12:
https://admin.fedoraproject.org/updates/R-2.10.0-2.fc12

EL-4:
https://admin.fedoraproject.org/updates/R-2.10.0-2.el4

EL-5:
https://admin.fedoraproject.org/updates/R-2.10.0-2.el5

Remember that EL-4 and EL-5 updates for R have to sit in updates-testing
for 3 weeks, unless they receive 3 "positive" karma votes. If you use
these packages and you want them to hit the updates repository sooner,
please test them and give feedback at the above links.

~spot

[Pierre-Yves Chibon]

On Mon, 2009-11-09 at 14:32 +1000, Tom "spot" Callaway wrote:
>  We can also stop using the macro for the %post/%postun scriptlets in
>  all
>  R module packages, but for now, the script checks the version of R and
>  only runs the index.txt generation bits if R < 2.10.0 (basically, a
>  noop
>  for everything we care about).
>  
>  We probably need to coordinate a rebuild of all R modules as part of
>  this, so it might not be a bad time to drop the %_R_make_search_index
>  scriptlet macro everywhere. 
I am planning on rebuilding all my bioconductor package to their latest
version this week-end (hopefully fixing all the FTBFS, they all do!).
I will kick out the %post and %postun at the same time.

Shall I also fix this in R2spec ?

Thanks,

Pierre

[Tom Callaway]

On 11/19/2009 04:43 PM, Pierre-Yves wrote:
>  On Mon, 2009-11-09 at 14:32 +1000, Tom "spot" Callaway
> wrote:
> > We can also stop using the macro for the %post/%postun scriptlets in
> > all
> > R module packages, but for now, the script checks the version of R and
> > only runs the index.txt generation bits if R < 2.10.0 (basically, a
> > noop
> > for everything we care about).
> >
> > We probably need to coordinate a rebuild of all R modules as part of
> > this, so it might not be a bad time to drop the %_R_make_search_index
> > scriptlet macro everywhere.
>  
>  I am planning on rebuilding all my bioconductor package to their latest
>  version this week-end (hopefully fixing all the FTBFS, they all do!).
>  I will kick out the %post and %postun at the same time.
>  
>  Shall I also fix this in R2spec ? 
Sounds like a plan.

~spot

[José Abílio Matos]

On Thursday 19 November 2009 21:43:28 Pierre-Yves wrote:
>  Shall I also fix this in R2spec ? 
FWIW you have my moral support. ;-)

Think of it as your good deed of the day. :-)

>  Thanks,
>  
>  Pierre 
-- 
José Abílio

[Pierre-Yves Chibon]

On Thu, 2009-11-19 at 22:43 +0100, Pierre-Yves wrote:
>  
>  I am planning on rebuilding all my bioconductor package to their
>  latest
>  version this week-end (hopefully fixing all the FTBFS, they all do!).
>  I will kick out the %post and %postun at the same time. 
As you might have seen on the rawhide report, the updates are done at
the CVS level. 13 packages are built and wait to be pushed on testing
the other will come in the coming 2 weeks I think.

Also, the list of package in Fedora has been updated by Remi for the
latest version of bioconductor:
http://rpms.famillecollet.com/rpmphp/rpm.php?type=R
He also created a page per package with some information (for example:
http://rpms.famillecollet.com/rpmphp/zoom.php?rpm=R-abind )

Good week-end,

Pierre