Yet another gargantuan mathematical software update

[Jerry James]

Hi folks,

It's about time for another "update the world" moment for some of the
mathematical software we have in Fedora.  I'm going to try to clear
away a big chunk of my backlogged package work with this update, so it
will be even bigger than usual.  Primary goals are to switch from
atlas or the reference blas to openblas, and to drop python 2
packages.

I plan to do all of the necessary rebuilds myself.  Package
maintainers, if you would rather that I did not rebuild your package
for you, please let me know.  Otherwise, I will do all of these builds
in approximately 1 week from today.  I plan to build for Rawhide only.

As usual with this package set, the rebuilds will take a few days, so
expect broken dependencies in the middle.

4ti2: revive this package now that latte-integrale upstream has split
it back out

arb: update to 2.15.0

cddlib: update to 0.94j; epoch bump needed to deal with the new dot in
the version number

ceres-solver: rebuild for tbb

cocoalib: switch to openblas

cryptominisat: update to 5.6.5

cxsc: switch to openblas

DSDP: switch to openblas

eclib: update to 20180815

embree: rebuild for tbb

fawkes: rebuild for tbb

fflas-ffpack: switch to openblas

flint: switch to openblas (needs rebuild anyway due to ntl update)

gazebo: rebuild for tbb

gfan: rebuild for cddlib

giac: rebuild for ntl

iml: switch to openblas

latte-integrale: update to 1.7.5.  Not really integrale anymore since
4ti2 was unbundled...

linbox: switch to openblas, enable OpenCL interface

Macaulay2: switch to openblas (needs rebuild anyway due to ntl update)

mathicgb: rebuild for tbb, fix incompatibility with recent gtest versions

ntl: update to 11.3.0.  This involves an soname bump.

OCE: rebuild for tbb

opencv: rebuild for tbb

openvdb: rebuild for tbb

polymake: rebuild for cddlib

pynac: switch to openblas, switch from python 2 to python 3

python-cvxopt: update to 1.2.1, switch to openblas, drop the python 2 subpackage

python-fastcache: update to 1.1.0, drop the python 2 subpackage

python-networkx: update to 2.1, drop the python 2 subpackages,
consolidate back to a single package again since this cannot appear in
EPEL < 8 anyway

python-theano: switch to openblas, build with libgpuarray for OpenCL
support, drop the python 2 subpackage

root: rebuild for tbb

sagemath: switch to openblas, switch (with great fear and trepidation)
to the experimental python 3 build

Singular: rebuild for cddlib

suitesparse: rebuild for tbb

sympol: rebuild for cddlib

sympy: update to 1.3, drop the python 2 subpackage

tbb: update to 2019_U1.  This has the same soname, but has a
backwards-incompatible ABI change on 32-bit platforms.  Therefore, all
consumers must be rebuilt.

TOPCOM: rebuild for cddlib

Regards,
-- 
Jerry James
http://www.jamezone.org/

[Fabio Valentini]

On Sun, Oct 7, 2018 at 3:18 AM Jerry James <loganjerry(a)gmail.com&gt; wrote:
>  Hi folks,
>
>  It's about time for another "update the world" moment for some of the
>  mathematical software we have in Fedora.  I'm going to try to clear
>  away a big chunk of my backlogged package work with this update, so it
>  will be even bigger than usual.  Primary goals are to switch from
>  atlas or the reference blas to openblas, and to drop python 2
>  packages.
>
>  I plan to do all of the necessary rebuilds myself.  Package
>  maintainers, if you would rather that I did not rebuild your package
>  for you, please let me know.  Otherwise, I will do all of these builds
>  in approximately 1 week from today.  I plan to build for Rawhide only.
>
>  As usual with this package set, the rebuilds will take a few days, so
>  expect broken dependencies in the middle. 
Thank you for doing all this work!
Seriously, I can't imagine the kind of headache that dealing with
these packages must cause.

Fabio

> 4ti2: revive this package now that latte-integrale upstream has split
> it back out
>
> arb: update to 2.15.0
>
> cddlib: update to 0.94j; epoch bump needed to deal with the new dot in
> the version number
>
> ceres-solver: rebuild for tbb
>
> cocoalib: switch to openblas
>
> cryptominisat: update to 5.6.5
>
> cxsc: switch to openblas
>
> DSDP: switch to openblas
>
> eclib: update to 20180815
>
> embree: rebuild for tbb
>
> fawkes: rebuild for tbb
>
> fflas-ffpack: switch to openblas
>
> flint: switch to openblas (needs rebuild anyway due to ntl update)
>
> gazebo: rebuild for tbb
>
> gfan: rebuild for cddlib
>
> giac: rebuild for ntl
>
> iml: switch to openblas
>
> latte-integrale: update to 1.7.5.  Not really integrale anymore since
> 4ti2 was unbundled...
>
> linbox: switch to openblas, enable OpenCL interface
>
> Macaulay2: switch to openblas (needs rebuild anyway due to ntl update)
>
> mathicgb: rebuild for tbb, fix incompatibility with recent gtest versions
>
> ntl: update to 11.3.0.  This involves an soname bump.
>
> OCE: rebuild for tbb
>
> opencv: rebuild for tbb
>
> openvdb: rebuild for tbb
>
> polymake: rebuild for cddlib
>
> pynac: switch to openblas, switch from python 2 to python 3
>
> python-cvxopt: update to 1.2.1, switch to openblas, drop the python 2 subpackage
>
> python-fastcache: update to 1.1.0, drop the python 2 subpackage
>
> python-networkx: update to 2.1, drop the python 2 subpackages,
> consolidate back to a single package again since this cannot appear in
> EPEL < 8 anyway
>
> python-theano: switch to openblas, build with libgpuarray for OpenCL
> support, drop the python 2 subpackage
>
> root: rebuild for tbb
>
> sagemath: switch to openblas, switch (with great fear and trepidation)
> to the experimental python 3 build
>
> Singular: rebuild for cddlib
>
> suitesparse: rebuild for tbb
>
> sympol: rebuild for cddlib
>
> sympy: update to 1.3, drop the python 2 subpackage
>
> tbb: update to 2019_U1.  This has the same soname, but has a
> backwards-incompatible ABI change on 32-bit platforms.  Therefore, all
> consumers must be rebuilt.
>
> TOPCOM: rebuild for cddlib
>
> Regards,
> --
> Jerry James
> http://www.jamezone.org/
> _______________________________________________
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[Nicolas Mailhot]

Le samedi 06 octobre 2018 à 19:17 -0600, Jerry James a écrit :

Hi,

>  I plan to do all of the necessary rebuilds myself.  Package
>  maintainers, if you would rather that I did not rebuild your package
>  for you, please let me know.  Otherwise, I will do all of these builds
>  in approximately 1 week from today.  I plan to build for Rawhide only. 
Thanks a lot for the huge piece of work!
IIRC, there are a few math Go packages in the pipeline, that use *las
too, not sure if they’ve reached rawhide yet or not (the guys who
package them do not use the math stuff themselves, its just here as a
dep for something else).

Reagrds

-- 
Nicolas Mailhot

[Jerry James]

On Sun, Oct 7, 2018 at 4:20 AM Nicolas Mailhot
<nicolas.mailhot(a)laposte.net&gt; wrote:
>  Thanks a lot for the huge piece of work!
>  IIRC, there are a few math Go packages in the pipeline, that use *las
>  too, not sure if they’ve reached rawhide yet or not (the guys who
>  package them do not use the math stuff themselves, its just here as a
>  dep for something else). 
Good to know.  I will keep an eye out for them.  Thank you,
-- 
Jerry James
http://www.jamezone.org/

[Till Hofmann]

On 10/7/18 2:17 AM, Jerry James wrote:
>  Hi folks,
>  
>  It's about time for another "update the world" moment for some of the
>  mathematical software we have in Fedora.  I'm going to try to clear
>  away a big chunk of my backlogged package work with this update, so it
>  will be even bigger than usual.  Primary goals are to switch from
>  atlas or the reference blas to openblas, and to drop python 2
>  packages.
>  
>  I plan to do all of the necessary rebuilds myself.  Package
>  maintainers, if you would rather that I did not rebuild your package
>  for you, please let me know.  Otherwise, I will do all of these builds
>  in approximately 1 week from today.  I plan to build for Rawhide only.
>  
>  As usual with this package set, the rebuilds will take a few days, so
>  expect broken dependencies in the middle.
>  
>  gazebo: rebuild for tbb 
FYI: gazebo is currently FTBFS because player is FTBFS. I looked into
player and fixed two smaller issues [1], but it's still FTBFS [2]. It
looks like it's still requiring python2 but uses the default python3
during build and then fails. So it needs to be migrated to python3...


Regards,
Till

[1] https://src.fedoraproject.org/rpms/player/pull-request/3
[2] https://koji.fedoraproject.org/koji/taskinfo?taskID=30098425

[Jerry James]

On Sun, Oct 7, 2018 at 7:33 AM Till Hofmann <thofmann(a)fedoraproject.org&gt; wrote:
>  FYI: gazebo is currently FTBFS because player is FTBFS. I looked
> into
>  player and fixed two smaller issues [1], but it's still FTBFS [2]. It
>  looks like it's still requiring python2 but uses the default python3
>  during build and then fails. So it needs to be migrated to python3... 
Okay, I will skip gazebo ... and fawkes too, then, right?  Thanks,
-- 
Jerry James
http://www.jamezone.org/

[Till Hofmann]

On 10/12/18 9:14 PM, Jerry James wrote:
>  On Sun, Oct 7, 2018 at 7:33 AM Till Hofmann
> <thofmann(a)fedoraproject.org&gt; wrote:
> > FYI: gazebo is currently FTBFS because player is FTBFS. I looked into
> > player and fixed two smaller issues [1], but it's still FTBFS [2]. It
> > looks like it's still requiring python2 but uses the default python3
> > during build and then fails. So it needs to be migrated to python3...
>  
>  Okay, I will skip gazebo ... and fawkes too, then, right?  Thanks,
>   
Yes, I'm afraid so.

Thanks,
Till

[Charalampos Stratakis]

----- Original Message -----
>  From: "Jerry James" <loganjerry(a)gmail.com&gt;
>  To: "Development discussions related to Fedora"
> <devel(a)lists.fedoraproject.org&gt;
>  Sent: Sunday, October 7, 2018 3:17:04 AM
>  Subject: Yet another gargantuan mathematical software update
>  
>  Hi folks,
>  
>  It's about time for another "update the world" moment for some of the
>  mathematical software we have in Fedora.  I'm going to try to clear
>  away a big chunk of my backlogged package work with this update, so it
>  will be even bigger than usual.  Primary goals are to switch from
>  atlas or the reference blas to openblas, and to drop python 2
>  packages.
>  
>  I plan to do all of the necessary rebuilds myself.  Package
>  maintainers, if you would rather that I did not rebuild your package
>  for you, please let me know.  Otherwise, I will do all of these builds
>  in approximately 1 week from today.  I plan to build for Rawhide only.
>  
>  As usual with this package set, the rebuilds will take a few days, so
>  expect broken dependencies in the middle.
>  
>  4ti2: revive this package now that latte-integrale upstream has split
>  it back out
>  
>  arb: update to 2.15.0
>  
>  cddlib: update to 0.94j; epoch bump needed to deal with the new dot in
>  the version number
>  
>  ceres-solver: rebuild for tbb
>  
>  cocoalib: switch to openblas
>  
>  cryptominisat: update to 5.6.5
>  
>  cxsc: switch to openblas
>  
>  DSDP: switch to openblas
>  
>  eclib: update to 20180815
>  
>  embree: rebuild for tbb
>  
>  fawkes: rebuild for tbb
>  
>  fflas-ffpack: switch to openblas
>  
>  flint: switch to openblas (needs rebuild anyway due to ntl update)
>  
>  gazebo: rebuild for tbb
>  
>  gfan: rebuild for cddlib
>  
>  giac: rebuild for ntl
>  
>  iml: switch to openblas
>  
>  latte-integrale: update to 1.7.5.  Not really integrale anymore since
>  4ti2 was unbundled...
>  
>  linbox: switch to openblas, enable OpenCL interface
>  
>  Macaulay2: switch to openblas (needs rebuild anyway due to ntl update)
>  
>  mathicgb: rebuild for tbb, fix incompatibility with recent gtest versions
>  
>  ntl: update to 11.3.0.  This involves an soname bump.
>  
>  OCE: rebuild for tbb
>  
>  opencv: rebuild for tbb
>  
>  openvdb: rebuild for tbb
>  
>  polymake: rebuild for cddlib
>  
>  pynac: switch to openblas, switch from python 2 to python 3
>  
>  python-cvxopt: update to 1.2.1, switch to openblas, drop the python 2
>  subpackage
>  
>  python-fastcache: update to 1.1.0, drop the python 2 subpackage
>  
>  python-networkx: update to 2.1, drop the python 2 subpackages,
>  consolidate back to a single package again since this cannot appear in
>  EPEL < 8 anyway
>  
>  python-theano: switch to openblas, build with libgpuarray for OpenCL
>  support, drop the python 2 subpackage
>  
>  root: rebuild for tbb
>  
>  sagemath: switch to openblas, switch (with great fear and trepidation)
>  to the experimental python 3 build
>  
>  Singular: rebuild for cddlib
>  
>  suitesparse: rebuild for tbb
>  
>  sympol: rebuild for cddlib
>  
>  sympy: update to 1.3, drop the python 2 subpackage
>  
>  tbb: update to 2019_U1.  This has the same soname, but has a
>  backwards-incompatible ABI change on 32-bit platforms.  Therefore, all
>  consumers must be rebuilt.
>  
>  TOPCOM: rebuild for cddlib
>  
>  Regards,
>  --
>  Jerry James
>  http://www.jamezone.org/
>  _______________________________________________
>  devel mailing list -- devel(a)lists.fedoraproject.org
>  To unsubscribe send an email to devel-leave(a)lists.fedoraproject.org
>  Fedora Code of Conduct: https://getfedora.org/code-of-conduct.html
>  List Guidelines: https://fedoraproject.org/wiki/Mailing_list_guidelines
>  List Archives:
>  https://lists.fedoraproject.org/archives/list/[e-mail]
>   
Thank you for all that work!
-- 
Regards,

Charalampos Stratakis
Software Engineer
Python Maintenance Team, Red Hat